BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0039.p (231 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value HI1025 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 306 1e-83 STM3677 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related... 296 2e-80 SP2033 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 296 2e-80 YPO3326 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related... 296 2e-80 YPO2230 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related... 295 4e-80 >HI1025 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 231 Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 145/231 (62%), Positives = 181/231 (78%), Gaps = 1/231 (0%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 ML QLK+EVF+ANL LPKH LV +TWGNVSA+DR L VIKPSGV YD M +DMVVVD Sbjct: 1 MLAQLKKEVFEANLALPKHHLVTFTWGNVSAIDREKNLVVIKPSGVDYDVMTENDMVVVD 60 Query: 61 -FDGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHAD 119 F GN+VEG+ +PSSDTPTH LY+ + IGGIVHTHS AT+WAQAGLD+ +GTTH D Sbjct: 61 LFTGNIVEGNKKPSSDTPTHLELYRQFPHIGGIVHTHSRHATIWAQAGLDIIEVGTTHGD 120 Query: 120 TFYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDA 179 FYG++PCTR +T +EI YE ETG+VI+ETF RG++ +P VL+ H PF WGKDA Sbjct: 121 YFYGTIPCTRQMTTKEIKGNYELETGKVIVETFLSRGIEPDNIPAVLVHSHGPFAWGKDA 180 Query: 180 HSAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQ 230 ++AV N+VVLEEV+ MNLF+++LN + + + +LDKHYLRKHG++AYYGQ Sbjct: 181 NNAVHNAVVLEEVAYMNLFSQQLNPYLSPMQKDLLDKHYLRKHGQNAYYGQ 231 >STM3677 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 231 Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 143/231 (61%), Positives = 171/231 (74%), Gaps = 1/231 (0%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 MLEQLK EV ANL LP HGLV +TWGNVSAVD +L VIKPSGV Y+ M DMVVV+ Sbjct: 1 MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYEVMTADDMVVVE 60 Query: 61 F-DGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHAD 119 G VVEG +PSSDT TH LY+ Y +IGGIVHTHS AT+W+QAGLD+P GTTHAD Sbjct: 61 IASGKVVEGHKKPSSDTATHLALYRRYPQIGGIVHTHSRHATIWSQAGLDLPAWGTTHAD 120 Query: 120 TFYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDA 179 FYG++PCTR +T EEI+ YE +TG VII+TFE+RGLD +P VL+ H PF WGK+A Sbjct: 121 YFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDPAQIPAVLVHSHGPFAWGKNA 180 Query: 180 HSAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQ 230 AV N+VVLEE + M LF+R+L ++ +LDKHYLRKHG +AYYGQ Sbjct: 181 ADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLDKHYLRKHGANAYYGQ 231 >SP2033 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 227 Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 137/227 (60%), Positives = 172/227 (75%) Query: 5 LKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVDFDGN 64 +++ V AN LPKHGLVK+TWGNVS V+R + VIKPSGV YD++ P +MVV D DG Sbjct: 1 MRKRVCDANQSLPKHGLVKFTWGNVSEVNRELGVIVIKPSGVDYDELTPENMVVTDLDGK 60 Query: 65 VVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHADTFYGS 124 ++EGDLRPSSD PTH LYK ++EIG +VHTHST A WAQAG D+P GTTHAD FYGS Sbjct: 61 ILEGDLRPSSDLPTHVQLYKTWSEIGSVVHTHSTEAVGWAQAGRDIPFYGTTHADYFYGS 120 Query: 125 VPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDAHSAVM 184 +PC R LT++E++ YE +TG VI+E FE RGL+ + VPG++++ H PFTWGK+ +AV Sbjct: 121 IPCARSLTKDEVEVAYEKDTGLVIVEEFEHRGLNPVEVPGIVVRNHGPFTWGKNPENAVY 180 Query: 185 NSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQK 231 +SVVLEEVSKMN F ++N PQ IL+KHY RKHG +AYYGQK Sbjct: 181 HSVVLEEVSKMNRFTEQINPRVGPAPQYILEKHYQRKHGPNAYYGQK 227 >YPO3326 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 231 Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 142/231 (61%), Positives = 173/231 (74%), Gaps = 1/231 (0%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 MLEQLK++VF+ANL LPK+ LV +TWGNVS +DR L VIKPSGV YD M +DMVVVD Sbjct: 1 MLEQLKQQVFEANLALPKYKLVTFTWGNVSGIDREHGLVVIKPSGVEYDVMSVNDMVVVD 60 Query: 61 F-DGNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHAD 119 G VVEGD +PSSDT TH VLY+ +AEIGGIVHTHS AT+WAQAG + +GTTHAD Sbjct: 61 LATGKVVEGDKKPSSDTDTHLVLYRAFAEIGGIVHTHSRHATIWAQAGKSLSALGTTHAD 120 Query: 120 TFYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDA 179 FYG +PCTR +T+ EI YE ETG+VI+ETF ++GL +P VL+ GH PF WG +A Sbjct: 121 YFYGPIPCTRLMTEAEITGDYEHETGKVIVETFAEQGLRAADIPAVLVNGHGPFAWGSNA 180 Query: 180 HSAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQ 230 +AV N+VVLEE++ MNLF +L ++ Q +LDKHYLRKHG AYYGQ Sbjct: 181 ANAVHNAVVLEEIAYMNLFTHQLTPGVGDMQQTLLDKHYLRKHGAAAYYGQ 231 >YPO2230 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 231 Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 142/231 (61%), Positives = 174/231 (75%), Gaps = 1/231 (0%) Query: 1 MLEQLKEEVFQANLDLPKHGLVKYTWGNVSAVDRASRLFVIKPSGVHYDKMKPSDMVVVD 60 ML +LK++V ANL LP+H LV +TWGNVSA+DR L VIKPSGV Y M DMVVV+ Sbjct: 1 MLNELKQQVLAANLALPRHNLVTFTWGNVSAIDRQKGLLVIKPSGVEYASMTLDDMVVVE 60 Query: 61 FD-GNVVEGDLRPSSDTPTHAVLYKHYAEIGGIVHTHSTWATVWAQAGLDVPVMGTTHAD 119 + GNVVEG +PSSDT TH VLY ++ +IGGIVHTHS AT+WAQAGLD+P GTTHAD Sbjct: 61 LESGNVVEGSKKPSSDTDTHRVLYLNFPQIGGIVHTHSRHATIWAQAGLDLPAWGTTHAD 120 Query: 120 TFYGSVPCTRFLTQEEIDRGYEAETGRVIIETFEQRGLDIMAVPGVLLKGHAPFTWGKDA 179 FYGS+PCTR +T EEI YE ETG VI++TF +RG+ AVP VL+ H PF WG A Sbjct: 121 YFYGSIPCTRLMTHEEIAGRYEWETGNVIVDTFHERGITPDAVPAVLVNSHGPFAWGSSA 180 Query: 180 HSAVMNSVVLEEVSKMNLFARELNHFAEELPQRILDKHYLRKHGKDAYYGQ 230 +AV N+VVLEE++ M +F+R+LN ++ ++LDKHYLRKHGKDAYYGQ Sbjct: 181 ENAVHNAVVLEELAYMGIFSRQLNPQLGDMQPQLLDKHYLRKHGKDAYYGQ 231 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,496,090 Number of extensions: 719058 Number of successful extensions: 1363 Number of sequences better than 1.0e-05: 34 Number of HSP's gapped: 1342 Number of HSP's successfully gapped: 34 Length of query: 231 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 128 Effective length of database: 26,499,029 Effective search space: 3391875712 Effective search space used: 3391875712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)