BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0031.p
         (133 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0909 [K] COG1725 Predicted transcriptional regulators              140   7e-34
CAC0599 [K] COG1725 Predicted transcriptional regulators              122   1e-28
STM0766 [C] COG3630 Na+-transporting methylmalonyl-CoA/oxaloacet...    78   4e-15
BS_ytrA [K] COG1725 Predicted transcriptional regulators               71   3e-13
BH1164 [K] COG1725 Predicted transcriptional regulators                63   1e-10

>lin0909 [K] COG1725 Predicted transcriptional regulators
          Length = 130

 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 93/131 (70%), Gaps = 1/131 (0%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           + + +DLQS+ PIY Q+ +Q+IEG+A  EL PGD LPSVR L  D+GIN HTVNK+Y +L
Sbjct: 1   MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
           KQEGF+Q+HR+KGV++ PDG+    + F  KL+ +LR L     VR +SEE + + S+++
Sbjct: 61  KQEGFIQIHRQKGVVIHPDGVAKADQLFFTKLQTKLRPLIAESIVRSVSEEEWLEISKAI 120

Query: 121 YRNAITNRGGE 131
           + + I  RG E
Sbjct: 121 F-DEIKGRGVE 130


>CAC0599 [K] COG1725 Predicted transcriptional regulators
          Length = 125

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 83/121 (68%), Gaps = 1/121 (0%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           + I +D +SETPIY QL +QL+ G+A GEL+ G+ LPSVR++AED+GINLHTVNK YN+L
Sbjct: 1   MLIRIDFESETPIYEQLKNQLVIGMAKGELRRGESLPSVRQMAEDIGINLHTVNKVYNIL 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
           KQEG+L + R+ G ++  + MP  TE F EKL ++L  +      R +S++ F      +
Sbjct: 61  KQEGYLNIDRRIGAVIN-ENMPERTEEFSEKLIKELEYVIADCKCRDISKKEFLDICSKI 119

Query: 121 Y 121
           Y
Sbjct: 120 Y 120


>STM0766 [C] COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate
           decarboxylase, gamma subunit
          Length = 81

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 0/122 (0%), Positives = 0/122 (0%), Gaps = 4/122 (3%)

Query: 1   LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
           +   + L     +    +  ++  +            +V R   +          +    
Sbjct: 1   MNSSVLLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSAAVNRFFPEPVPVPKAAPAAAPAD 60

Query: 61  KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120
                                                                       
Sbjct: 61  ----                                                         116

Query: 121 YR 122
             
Sbjct: 117    118


>BS_ytrA [K] COG1725 Predicted transcriptional regulators
          Length = 130

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 2   FIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLLK 61
            I++D +S TPIY Q+I Q+ E    G +KPGD LPSVR LA  +  N +TV+K+Y  L+
Sbjct: 1   MIQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELE 60

Query: 62  QEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSVY 121
           +EG ++  R +G  +  +    + E     +++QL+ L       G+  E   +  + + 
Sbjct: 61  REGIIETLRGRGTYISENAKTTLVEGKMTMIKEQLKQLIIDAHYAGVELEKLHEWIKEIS 120

Query: 122 RNAITNRGGEQ 132
            +    +GG++
Sbjct: 121 ADV---KGGKK 128


>BH1164 [K] COG1725 Predicted transcriptional regulators
          Length = 135

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 50/80 (62%)

Query: 1  LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60
          L I+++  S +PIY Q+ +Q+   I SG L  GDPLPS+R LA++   ++ T  ++Y  L
Sbjct: 3  LPIKIEQNSRSPIYHQIEEQIKALIVSGHLNEGDPLPSIRALAKETACSVITTRRAYQNL 62

Query: 61 KQEGFLQVHRKKGVIVQPDG 80
          +QEG+++  + KG  V   G
Sbjct: 63 EQEGYIRTTQGKGTFVAKIG 82


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,346,571
Number of extensions: 341641
Number of successful extensions: 1054
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 42
Length of query: 133
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 38
Effective length of database: 27,421,701
Effective search space: 1042024638
Effective search space used: 1042024638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)