BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0016.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurM [G] COG0395 ABC-type sugar transport system, permease co... 165 9e-41 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 147 2e-35 BMEII0752 [G] COG0395 ABC-type sugar transport system, permease ... 145 9e-35 BMEI1714 [G] COG0395 ABC-type sugar transport system, permease c... 137 3e-32 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 131 1e-30 >BS_yurM [G] COG0395 ABC-type sugar transport system, permease component Length = 300 Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 143/254 (56%), Gaps = 3/254 (1%) Query: 25 YPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXXXXX 84 YPL+W+ +S+FK + D ++ SLPS + N+ S WN+G + +YF NS Sbjct: 50 YPLLWMVMSAFKNSDDIF-EHSWSLPSSWHPENFVSAWNQG-ISSYFMNSVIVTALTCVI 107 Query: 85 XXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTSLIL 144 SA AA+ + + FK L L L G+M+ QV L+PL+ + +G+ NT +LIL Sbjct: 108 TVFISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALIL 167 Query: 145 PQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVVMNL 204 P + +P +I L S++ IS E+ EAA +DGC + VF+R+ P+S +VT ++ Sbjct: 168 PYAAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMSVPILVTSGILTA 227 Query: 205 IFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYFIFN 264 WNEF+FA FI D RTIP GLM + TDWG A ++I+ P ++++ + Sbjct: 228 YHTWNEFMFAIIFIDDENLRTIPAGLMQFRDALQ-TDWGVLLAGLTISAAPIIILFLLMQ 286 Query: 265 KSVISGMTAGATKG 278 K + G+ +G+ KG Sbjct: 287 KYFVRGIASGSVKG 300 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 137/259 (52%), Gaps = 3/259 (1%) Query: 22 IQVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVW---NKGNLGTYFSNSXXXX 78 I VYP++W+ SS K ++ +PS+F + NY W + YF NS Sbjct: 23 IMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIIT 82 Query: 79 XXXXXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINT 138 S++ A+ ++ FK+ + + + +M+P+Q+ LIP +IL++ +G +NT Sbjct: 83 TSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNT 142 Query: 139 LTSLILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVT 198 LI+P P I+L + F + I E+ EAA++DGC + VFWR+I PL + +VT Sbjct: 143 FYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVT 202 Query: 199 VVVMNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMV 258 V + ++ W++F+ +++ +T+ +GL +++ T WGA A +++ +P + Sbjct: 203 VAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFI 262 Query: 259 VYFIFNKSVISGMTAGATK 277 ++ F + ++ G++ K Sbjct: 263 IFLFFQRYLVEGISTTGLK 281 >BMEII0752 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 139/258 (53%), Gaps = 4/258 (1%) Query: 22 IQVYPLVWVFISSFKATTDFSGDNPLSLPS--QFTFGNYYSVWNKGNLGTYFSNSXXXXX 79 I V+P+ I+SFK+ + PL P+ F+ Y +V +G+ TYF NS Sbjct: 24 IAVFPVALTLINSFKSRNAIFRE-PLRFPTPESFSLIGYETVLKQGSFLTYFQNSAIVTV 82 Query: 80 XXXXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTL 139 F AMAAF + + F+ + GIMIPI++ + L G++NTL Sbjct: 83 VSIFLVILFGAMAAFALAEYRFRGNMLTGLYLAIGIMIPIRLGTVALLQGMVAAGLVNTL 142 Query: 140 TSLILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTV 199 T+LIL LP++I++ F + +S+++ A +DG Y +F++++ PL R + TV Sbjct: 143 TALILVYTAQGLPLAIFILSEFMRTVSDDLKNAGRIDGMSEYAIFFKLVLPLIRPAMATV 202 Query: 200 VVMNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVV 259 V +I +WN+ F ++T+ +G +IGQ+ +T+W A AA+S+ P +++ Sbjct: 203 AVFTMIPIWNDLWFPLILAPSEATKTVTLGAQLFIGQF-VTNWNAVLAALSLAMFPILIL 261 Query: 260 YFIFNKSVISGMTAGATK 277 Y +F++ +I G+TAGA K Sbjct: 262 YVLFSRQLIRGITAGAVK 279 >BMEI1714 [G] COG0395 ABC-type sugar transport system, permease component Length = 294 Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 6/258 (2%) Query: 26 PLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLG-----TYFSNSXXXXXX 80 P W+ +SS + + P+ +P + Y ++++ G YF NS Sbjct: 38 PGFWIVLSSLRPPVEIMAKPPVWIPQDISLDAYRTMFSGAGAGGVPVWDYFRNSIIVSVT 97 Query: 81 XXXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLT 140 + + F+ + F+ +P + +PLF++Y++IGII+T Sbjct: 98 STVVSLIIGMSGGYAFARFRFRGKSATFLGFMLTRSVPGIALSLPLFMVYSRIGIIDTHF 157 Query: 141 SLILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVV 200 LIL V +P + +L F++ + ++ EAA +DGC +Q FW++ FPL+ I + Sbjct: 158 GLILTYVALNIPFTTWLIDGFFRQVPKDLAEAAQIDGCTRWQAFWQVEFPLAGPGIASAG 217 Query: 201 VMNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVY 260 + + WNE+ A+ + S+T+PVGL+DY ++ + DW A + +P + + Sbjct: 218 IFAFLTCWNEYALASQLTRSVNSKTLPVGLLDYTAEFTI-DWRGMCALAVVMIVPALALT 276 Query: 261 FIFNKSVISGMTAGATKG 278 F+ K ++SG+T GA KG Sbjct: 277 FVIQKHLVSGLTFGAVKG 294 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 126/254 (49%), Gaps = 4/254 (1%) Query: 24 VYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXXXX 83 + P +W+ +SS K + P P FT N+ ++ + + Y N+ Sbjct: 27 ILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFF 86 Query: 84 XXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTSLI 143 +AMA + K FK + +L L +MIP QV +IP+++L N G+ NT+T ++ Sbjct: 87 GLF-LNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIV 145 Query: 144 LPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVVMN 203 LP G I+LF F IS++++EAA +DG + +FWR++ P+SR + ++ Sbjct: 146 LP--GLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILT 203 Query: 204 LIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYFIF 263 I WN F++ +D K T+ VGL GQYG +++ A + IP ++++ F Sbjct: 204 FIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYG-SNYALQMAGATFMVIPIILIFMTF 262 Query: 264 NKSVISGMTAGATK 277 K ++ G K Sbjct: 263 QKYILKGFNVSGMK 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,538,911 Number of extensions: 614456 Number of successful extensions: 2279 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 2068 Number of HSP's successfully gapped: 154 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)