BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0015.p (297 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 163 3e-40 AGc4553 [G] COG1175 ABC-type sugar transport systems, permease c... 160 2e-39 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 151 1e-36 TM0811 [G] COG1175 ABC-type sugar transport systems, permease co... 149 7e-36 Rv2040c [G] COG1175 ABC-type sugar transport systems, permease c... 146 4e-35 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 149/250 (59%), Gaps = 7/250 (2%) Query: 37 SMYFSFFSWDGVS-DMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVA 95 +++ S F W S + +IG NY ++F D F++A +NN++Y I + QVF GL++A Sbjct: 30 NVFLSLFQWSSFSPEKTFIGLKNYVELFH-DPVFYQALTNNVLYAVISIVCQVFGGLILA 88 Query: 96 ILLTS--ITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSR 153 +L + K F+T++F P +I+ IA LF +Y+ E G+LN LQ +GL +R Sbjct: 89 AVLEDKLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYNPE-TGLLNQLLQAIGLDQLTR 147 Query: 154 PWLSDLKWALSAVSVPEGWRYIGLYMIILYSALIS-IPSDIEEAARMDGASSWNLFRSIK 212 WL D A+ +V W+ +G Y+ +LY I IP ++ EAAR+DGA F I Sbjct: 148 AWLGDDSTAMLSVIFVSQWQSVG-YIAMLYIVSIQKIPDELYEAARLDGAGKIQQFFHIT 206 Query: 213 MPLIKPVLMVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSA 272 +P K + V+++M TGA F+ PY++T GGPG+ +E+L T++YK+AF+ GY SA Sbjct: 207 VPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGPGKASEVLSTFLYKSAFTKDMMGYASA 266 Query: 273 MAVFIVVESL 282 +A +++ +L Sbjct: 267 IATVVLIITL 276 >AGc4553 [G] COG1175 ABC-type sugar transport systems, permease components Length = 312 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 154/260 (59%), Gaps = 7/260 (2%) Query: 37 SMYFSFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAI 96 +++ S W + +IGFDNY ++ D FW++ + LIY + V +FLG L A+ Sbjct: 50 TLWMSVHRWTLGQEQSFIGFDNYIRL-ASDLRFWESLWHTLIYTVLSVVAPLFLGTLAAL 108 Query: 97 LLTSITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPWL 156 + + R + ++ P + T VAIA ++ ++ + +G+LN+ L +G+G W+ Sbjct: 109 VFDAQFPLRGFLRGVFVMPMMATPVAIALVWTMMFHPQ-LGVLNYLLSLIGIGPLE--WI 165 Query: 157 SDLKWALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPLI 216 + + ++ + E W++ L M+I+ L ++P + E+A +DGA++W FR + MP+I Sbjct: 166 YNQSTVIPSLVLVETWQWTPLVMLIVLGGLAAVPREPYESAEIDGANAWQKFRYLTMPMI 225 Query: 217 KPVLMVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSAMA-V 275 P LM+++I+ + A+K FDI Y MT GGPG +E + Y+Y TAFS D GYGSAMA V Sbjct: 226 APFLMIAVIIRSIDAVKSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDIGYGSAMAVV 285 Query: 276 FIVVESLIAVAFIRRMMDSK 295 F V+ ++A++F+ M+ + Sbjct: 286 FFVI--IVALSFVLLMVRQR 303 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 147/254 (57%), Gaps = 8/254 (3%) Query: 37 SMYFSFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAI 96 S + SF +D +S +Y G +NY M D FWK+ YVF+ + +++ L +A Sbjct: 30 SFFLSFTEYDLMSPPVYNGIENYRYMLTEDDLFWKSMGVTFAYVFLTIPLKLAFALGIAF 89 Query: 97 LLTSITKGRELFKTLYFAPAII-TSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPW 155 +L +G F+T ++ P+I+ +SVAIA L++ +++ + G+LN + G + W Sbjct: 90 VLNFKLRGIGFFRTAFYIPSILGSSVAIAVLWRALFAID--GLLNSFIGVFGFE--AINW 145 Query: 156 LSDLKWALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPL 215 L + AL++V++ W++ G M+I +AL ++P EAA +DGAS W +F + +PL Sbjct: 146 LGEPSLALTSVTLLRVWQF-GSAMVIFLAALQNVPQSQYEAAMIDGASKWQMFMKVTVPL 204 Query: 216 IKPVLMVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSAMA- 274 I PV+ + IM TT A + F PY++T GGP T L Y+Y TAF D GYG+A+A Sbjct: 205 ITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTYLFSLYIYDTAFKYFDMGYGAALAW 264 Query: 275 -VFIVVESLIAVAF 287 +F+VV ++AF Sbjct: 265 VLFLVVALFASIAF 278 >TM0811 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 141/247 (57%), Gaps = 7/247 (2%) Query: 41 SFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAILLTS 100 SF+ +D V + LYIG NY + D FW AF N+L+Y+ ++ +Q+ + +L+A+LL Sbjct: 43 SFYQYDIVGESLYIGLKNYVDLLR-DPLFWNAFKNSLLYLLVVPPLQL-ISILLAVLLDR 100 Query: 101 ITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPWLSDLK 160 +GR LF+TL F P ++T + IA + + + G +NF LQ + + D +LSD K Sbjct: 101 AIRGRNLFRTLIFLP-VVTPITIAAITWQ-WMYREKGFINFLLQSLHIIDEPIAFLSDPK 158 Query: 161 WALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPLIKPVL 220 AL A+ W+ G YM+I + L SIP ++ EAAR+DGA +F + +PL+KP + Sbjct: 159 IALFAIMFVTMWKGFGYYMVIYLAGLQSIPRELIEAARVDGAKPSQVFFKVTIPLLKPYI 218 Query: 221 MVSIIMATTGALKGFDIPYLMTNGGPGRVTELLPTYMYKTAFSSLDFGYGSAMAVFIVVE 280 + M++ AL F Y MT GGP TE + ++Y AF L FGY +A AV Sbjct: 219 LFCSTMSSIAALNVFGEIYAMTKGGPVHATETMGIFIYNRAFEYLQFGYSNAAAVLF--- 275 Query: 281 SLIAVAF 287 S + +AF Sbjct: 276 SFVVIAF 282 >Rv2040c [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 135/240 (56%), Gaps = 5/240 (2%) Query: 37 SMYFSFFSWDGVSDMLYIGFDNYAKMFGGDKTFWKAFSNNLIYVFIIVAMQVFLGLLVAI 96 S+Y SF WD + ++ DN+ +F D F A N +Y V V + L+VA Sbjct: 34 SLYMSFQKWDLFTHATFVRLDNFRNLFTSDPLFLIAVVNTAVYTVGTVVPTVIVSLVVAA 93 Query: 97 LLTSITKGRELFKTLYFAPAIITSVAIAQLFQNVYSFEPVGILNFCLQQMGLGDWSRPWL 156 L KG LF+T+ F P I+SV +A ++Q V++ + G+LN L +G+G PWL Sbjct: 94 FLNRKIKGISLFRTVVFLPLAISSVVMAVVWQFVFNTDN-GLLNIMLGWLGIGP--IPWL 150 Query: 157 SDLKWALSAVSVPEGWRYIGLYMIILYSALISIPSDIEEAARMDGASSWNLFRSIKMPLI 216 + +WA+ ++ + WR + ++L +A+ +P + EAAR+DGA F SI +PLI Sbjct: 151 IEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVYEAARIDGAGEIRQFVSITVPLI 210 Query: 217 KPVLMVSIIMATTGALKGFDIPYLMT--NGGPGRVTELLPTYMYKTAFSSLDFGYGSAMA 274 + L ++++ A + FD+ Y++T NGGP T +L +++ AFS L+FGY SA+A Sbjct: 211 RGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYVLGIMLFQHAFSFLEFGYASALA 270 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,102,400 Number of extensions: 751716 Number of successful extensions: 2785 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 2615 Number of HSP's successfully gapped: 197 Length of query: 297 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 191 Effective length of database: 26,153,027 Effective search space: 4995228157 Effective search space used: 4995228157 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)