BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0014.p (449 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 88 3e-17 PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic... 82 2e-15 PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic ... 76 9e-14 VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic... 69 1e-11 Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic... 65 2e-10 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 124/275 (45%), Gaps = 18/275 (6%) Query: 52 FVARGVDSPPAVTVKEIADKFSQTHPEFELVLEGTGDRPSYLQKLRTLIASNEMPAMFDT 111 F R P +E+ +F + HP+ ++ +E + SY K++ ++ + P ++ + Sbjct: 36 FFHRWPKEPEKSYFEEVVKEFEKDHPDIDIQIEAVLND-SYKDKIKVMLGTTSPPDIYFS 94 Query: 112 DPDAYASKLVQQGKLVDMKKLLEELGKYQDFRPVALQYQQFA-DGSMYTFPLEYGIEVFW 170 D +A K ++ K +D+ + + + V Q F + Y P + + F+ Sbjct: 95 WSDEFAFKFIRGNKALDLSSYYKNDTDWSS-QLVQSQITPFTYENKQYGVPWQMDAKSFF 153 Query: 171 YNIKMFKDLGLEPPKTFDEFMKVAETLKQSGVTPIAVDGKDKWPVLRYLAYKPFRMTGND 230 YN +F+ L L+PPKT+DE + V++ LK+ G TPI+ K W + Y+ RM Sbjct: 154 YNKDIFQKLNLDPPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEK 213 Query: 231 FIE---NVKQGKASFKDPAGMEGIKFVHDLGTKGYFQEGFTATDYTAARDLFLGGKAGMY 287 E N K G+ F D ++ ++ + +L YF + + D+ R F GK+ M Sbjct: 214 TREKDYNAKTGE--FTDEGYVKALEKLQEL--MPYFNKHVNSVDHEYVRQQFKSGKSAMI 269 Query: 288 YMGSWETMNFVNDKVSTEMKDNIGFFRLPMMEGAK 322 Y + E + N+G F P + G K Sbjct: 270 YAETAE--------IKLVEPVNLGMFPFPEISGQK 296 >PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 26/270 (9%) Query: 66 KEIADKFSQTHP--EFELVLEGTGDRPSYLQKLRTLIASNEMPA-MFDTDPDAYASKLVQ 122 K++ D++ + +P EFE V T Q L T + + + PA + T + ++ + Sbjct: 80 KQVLDEYQKINPNVEFEYV---TRRAEEIAQILPTQLEAKQAPADVVITSFGWFVVEMAK 136 Query: 123 QGKLVDMKKLLEELGKYQD--FRPVALQYQQFADGSMYTFPLEYGIEVFWYNIKMFKDLG 180 +G +VD+ ++ +Y F PV + + +A + +T L+ G FWY F+ G Sbjct: 137 RGHVVDLTNVINP-NEYVTGIFDPVTYEGKIWA--TPFTIVLKPG---FWYRKSFFQQHG 190 Query: 181 LEPPKTFDEFMKVAETLKQSGVTPIAVDGKDKWPVLRYLAYKPFRMTGNDFIENVKQGKA 240 L P+T+DEF+++ + LK+ GVTPIA WP+ G D + + K Sbjct: 191 LSEPQTWDEFLQLLKRLKEIGVTPIASGDGVGWPLSDVTEAFIIAYAGPDVFRGLTEKKV 250 Query: 241 SFKDPAGMEGIK-FVHDLGTKGYFQEGFTATDYTAARDLFLGGKAGMYYMGSWETMNFVN 299 F DP + + L +GYF E ++T A + + G G+Y+MG+W + V+ Sbjct: 251 KFDDPRINAVFRDRISLLLREGYFGE---PEEWTQAVEKWWNGTYGIYFMGTW-ILGMVD 306 Query: 300 DKVSTEMKDNIGFFRLPMMEGAKTAENDYF 329 + D++GFF +P +G T DY Sbjct: 307 N------PDDVGFFPMPETKGI-TGGTDYI 329 >PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 441 Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 21/289 (7%) Query: 49 YKWFVARGVDSPPAVTVKEIADKFSQTHPEFEL----VLEGTGDRPSYLQKLRTLIASNE 104 Y W+ A G +A KF + +P ++ V G G + L++L+ + + Sbjct: 47 YHWWTAGGEKE----AFDALAKKFEKKYPNIKIKANPVSGGGGVNLKMV--LQSLMLAGK 100 Query: 105 MPAMFDTDPDAYASKLVQQGKLVDMKKLLEELGKYQDFRPVALQYQQFADGSMYTFPLE- 163 P F ++ ++ +L + + E K P +Q + Y P+ Sbjct: 101 PPDTFQVHAGYEMARYIKANQLTPIDDIWTEDMKKN--YPKVIQQMVIFNNHYYAVPINV 158 Query: 164 YGIEVFWYNIKMFKDLGLEPP--KTFDEFMKVAETLKQSGVTPIAVDGKDKWPVLRYLAY 221 + V WYN ++FK G++P KT D+ VAE LK++GVTP A+ ++KWP + Sbjct: 159 HRANVIWYNKQIFKKYGIDPSSIKTIDDLFAVAEKLKENGVTPFALGDRNKWPATQVFEV 218 Query: 222 KPFRMTGNDFIENVKQGKASFKDPAGMEGIKFVHDLGTKGYFQEGFTATDYTAARDLFLG 281 + G D+ E G+ S DP + +++ + Y A + A L Sbjct: 219 MLVAVGGVDYYEKFINGEISANDPTLKKVLEYF--VKYVEYSNPDHAAKTWDEACALVYK 276 Query: 282 GKAGMYYMGSWETMNFVNDKVSTEMKDNIGFFRLPMMEGAKTAENDYFI 330 G+A M MG W F + K N+ + +P+ G D F+ Sbjct: 277 GEAAMTLMGDWANGYF----KAKGWKPNVDYGAIPIPAGVYDLVIDTFV 321 >VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 458 Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 125/302 (41%), Gaps = 23/302 (7%) Query: 149 YQQFADGSMYTFPLEYGIEVFWYNIKMFKDLGLEPPKTFDEFMKVAETLKQSG-VTPIAV 207 +Q + + P+ I F+YN K+F +LGL P+T ++F V + +K G P+++ Sbjct: 116 WQTDSGAQTFCVPMASVIHGFFYNKKIFNELGLSVPQTREQFFTVLDKVKADGRYIPLSM 175 Query: 208 DGKDKWPV--LRYLAYKPFRMTGNDFIENVKQGKASFKDPAGMEGIKFVHDLGT-KGYFQ 264 G + W L Y P G D + G+ D + +K +L + Y Sbjct: 176 SGSESWVASELGYQNIGPNYWKGEDGRLALINGQEHLDDS---QYVKVFEELARWRAYLG 232 Query: 265 EGFTATDYTAARDLFLGGKAGMYYMGSWETMNFVNDKVSTEMKDNIGFFRLPMMEGAKTA 324 E DY + +LF GKA +Y GSWE F DKV + G R P+ AK Sbjct: 233 EDGELRDYGTSNELFTSGKAALYVAGSWEIAPFT-DKV------DFGVMRPPV---AKQG 282 Query: 325 ENDYFI-NSGIGVAFNQETFD-DTMKEFVKFLLE-QYPKAYTEK--GQFSPFNYSLDQEQ 379 + +F ++ IG+ N + + F+++L ++ + YT G FS N+ D Sbjct: 283 DGCFFTDHTDIGMGMNPASKNPQAAMAFLQWLTTPEFAELYTNSLPGFFSLSNHFFDVTN 342 Query: 380 GMPELFYKIQDEIAKSGNVFAVPWDTRLDPATXXXXXXXXXXXXXXXHTPDDFAELMDQA 439 + +D+ + V A +R P TP AE ++Q Sbjct: 343 PAAREMMEWRDQCDSTIRV-ATQILSRGQPKLGDELAEVSQAVLVGKMTPTAAAERLEQG 401 Query: 440 IK 441 +K Sbjct: 402 LK 403 >Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 439 Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 126/309 (40%), Gaps = 41/309 (13%) Query: 67 EIADKFSQTHPEFELVLEGTGDRPSYLQKLRTLIASNEMPAMFDTDPDAYASKLVQQGKL 126 + ++F + +P+ ++ +G P +Q+L T A + P + YA +L +G L Sbjct: 54 RVVNEFQRRYPDIKVRALLSG--PGVMQQLATFCAGGKCPDVLMAWELTYA-ELADRGVL 110 Query: 127 VDMKKLL---EELGKYQDFRPVALQYQQFA-DGSMYTFPLEYGIEVFWYNIKMFKDLGLE 182 +D+ LL + + Y+ F +G Y FP ++ +YN ++F D G+ Sbjct: 111 LDLNTLLARDQAFAAELKSDSIGALYETFTFNGGQYAFPEQWSGNFLFYNKQLFDDAGVP 170 Query: 183 PPK-------TFDEFMKVAETLKQSGVTPIAVDGKDK-WPVLRYLAYKPFRMTGNDFIEN 234 PP +F EF+ A+ L + G + G+D+ W + A+ F G + N Sbjct: 171 PPPGSWERPWSFAEFLDAAQALTKQGRS-----GRDRQWGFVN--AWVSFYAAGLFAMNN 223 Query: 235 --------VKQGKASFKDPAGMEGIKFVHDLGTKGYFQEGFTATDYTAARDLFLGGKAGM 286 + +F +E ++F DL K + DLF GKAG+ Sbjct: 224 GVPWSVPRMNPTHLNFDHDGFLEAVQFYADLTNKHKVAPSAAEQQSMSTADLFSVGKAGI 283 Query: 287 YYMGSWETMNFVNDKVSTEMKDNIGF--FRLPMMEGAKTAENDYFINSGIGVAFNQETFD 344 G W F + D + F LP+ + A +D + +G+ +A D Sbjct: 284 ALAGHWRYQTF-------DRADGLDFDVAPLPIGPRGRAACSDIGV-TGLAIAATSRRKD 335 Query: 345 DTMKEFVKF 353 EFVKF Sbjct: 336 QAW-EFVKF 343 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,072,666 Number of extensions: 1284844 Number of successful extensions: 2476 Number of sequences better than 1.0e-05: 45 Number of HSP's gapped: 2477 Number of HSP's successfully gapped: 45 Length of query: 449 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 339 Effective length of database: 25,691,691 Effective search space: 8709483249 Effective search space used: 8709483249 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 117 (49.7 bits)