BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0011.p
         (57 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ygaK [C] COG0277 FAD/FMN-containing dehydrogenases                  78   3e-15
BS_yvdP [C] COG0277 FAD/FMN-containing dehydrogenases                  66   1e-11
RSc0050 [C] COG0277 FAD/FMN-containing dehydrogenases                  54   7e-08
YPO0308_1 [C] COG0277 FAD/FMN-containing dehydrogenases                47   6e-06

>BS_ygaK [C] COG0277 FAD/FMN-containing dehydrogenases
          Length = 367

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 2   EFKGDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           E  GDYVN+PD++I+NWP+ YYGEN  RL++VK  YDP NVF F QSIP
Sbjct: 311 ETMGDYVNWPDIEIRNWPRTYYGENVERLRRVKTTYDPENVFRFEQSIP 359


>BS_yvdP [C] COG0277 FAD/FMN-containing dehydrogenases
          Length = 447

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 5   GDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIPVSK 53
           G YVN PD  I+N+ K YYG NF RL+++K KYDP NVF F QSIP S+
Sbjct: 399 GSYVNVPDQNIENFGKEYYGANFARLREIKAKYDPENVFRFPQSIPPSR 447


>RSc0050 [C] COG0277 FAD/FMN-containing dehydrogenases
          Length = 508

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 5/52 (9%)

Query: 3   FKGDYVNFPD---LQIKNWPKAYYGEN--FGRLKQVKRKYDPHNVFHFAQSI 49
           ++G Y+N+PD   L    WP+ YYG+   +  L++VKR+YDP+N+FH A S+
Sbjct: 455 YEGCYINYPDVDMLAYPFWPQLYYGDGDLYAFLQRVKRRYDPNNIFHHAMSV 506


>YPO0308_1 [C] COG0277 FAD/FMN-containing dehydrogenases
          Length = 541

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 12/66 (18%)

Query: 2   EFKGDYVNFPDLQIK---------NWPKAYYG---ENFGRLKQVKRKYDPHNVFHFAQSI 49
           EF+G Y+N+PD+ +K         NW   YYG   +   RL  +K + DP+N+FH   SI
Sbjct: 476 EFEGCYINYPDIDMKYTDSGEEDPNWLNLYYGWDTQLIKRLIALKARIDPNNIFHHELSI 535

Query: 50  PVSKQV 55
           P+  ++
Sbjct: 536 PLVTEL 541


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,721,897
Number of extensions: 144824
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 4
Length of query: 57
Length of database: 38,378,431
Length adjustment: 30
Effective length of query: 27
Effective length of database: 34,918,411
Effective search space: 942797097
Effective search space used: 942797097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)