BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0009.p (231 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1636 [K] COG1396 Predicted transcriptional regulators 142 3e-34 PA1263 [K] COG1396 Predicted transcriptional regulators 102 4e-22 Cgl0484 [K] COG1396 Predicted transcriptional regulators 87 2e-17 Cgl1319 [K] COG1396 Predicted transcriptional regulators 82 9e-16 >mll1636 [K] COG1396 Predicted transcriptional regulators Length = 290 Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 124/231 (53%), Gaps = 1/231 (0%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQPK-A 59 VA ++G+ WYT LEQGRD+ S +VL +L LRL E+ HL LA R LP + + A Sbjct: 50 VAMIAGVGTTWYTWLEQGRDVRPSVEVLTALSGALRLDAAEKRHLFTLAGRQLPERRRIA 109 Query: 60 DDSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCGDLSRAPELERNILWRVFEV 119 V L +L + PAY++ RW+VLAWN + + GD + RNI+ VF Sbjct: 110 AGKVEGPLLHMLQSLVLQPAYVVGPRWDVLAWNDAAVAIFGDYGQLEGDARNIIHGVFTD 169 Query: 120 EDSKSRIVNWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVSGT 179 + + +WE VA +A FR+ A+Y+ D ++ L + S EFR W ++DV Sbjct: 170 PHRRHLLADWEQVARATLAAFRAESARYVGDPDFERLIALMMRSSPEFREWWPQRDVVHR 229 Query: 180 MEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTPLENLGTDEQLEALL 230 + G + + P AG + F + + +I + S + V+TPL + +L++LL Sbjct: 230 LSGMKHLRHPTAGAMVFEHMSLSIDDGSDMKLIVYTPLAEQNSIAKLQSLL 280 >PA1263 [K] COG1396 Predicted transcriptional regulators Length = 314 Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 5/231 (2%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQPK-- 58 VA L+G+ + WYT LEQGR + SEQV+ ++ R L + E +HL LA P + Sbjct: 84 VAQLAGVGVTWYTWLEQGRAVRASEQVIGAIARALLCNETETHHLFNLAGLAAPTSARRA 143 Query: 59 ADDSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCG-DLSRAPELERNILWRVF 117 + Q ILD + PA + + R+++ +N+ L G DL+ PE +RN ++ Sbjct: 144 VCEKPSAATQAILDALDPLPAMVQNARFDIRGYNRAYCRLVGIDLAEIPEEDRNCIYLAL 203 Query: 118 EVEDSKSRIVNWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVS 177 E + + N E+ MV FR+ + M D ++ + + S EFR +W R +V Sbjct: 204 THERWRYCMANREEALPRMVGFFRAAMVERMGDPLWERQLQRCLEASAEFREIWRRNEVM 263 Query: 178 GTMEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTPLENLGTD--EQL 226 G + G + + + + VF PL++ D EQL Sbjct: 264 GIENQLKRFRHARCGEFELQQTNWWSAPKNGDRLLVFVPLDDHARDCLEQL 314 >Cgl0484 [K] COG1396 Predicted transcriptional regulators Length = 260 Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 1/215 (0%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLANRFLPPQPKAD 60 VA L+GISL +Y E+G S ++L+SL + L+LS ER HL LA R P+ Sbjct: 45 VADLAGISLEYYIRFERGNLKGASPEILQSLAKALQLSPIEREHLHNLAYRADHPRNLPS 104 Query: 61 DSVPTT-LQQILDRMGTYPAYIIDKRWNVLAWNKISGTLCGDLSRAPELERNILWRVFEV 119 PT LQ I+D + PA+I +++ ++LA N++ L + + N F Sbjct: 105 AETPTAPLQDIVDAVTDKPAWIRNEQMDILATNRLCAELYAPIFKDLPDRPNTARHCFIG 164 Query: 120 EDSKSRIVNWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDRSEEFRTLWDRQDVSGT 179 + V+ + ++ A R +A+ + +EL D+L+ +S FR W DV Sbjct: 165 ATASEFWVDRDQFSAEFAAKLRLEYARRPSVPGLKELIDELHQKSSVFRDNWASADVLSF 224 Query: 180 MEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVF 214 G + P G + Y TF ++ + + + ++ Sbjct: 225 GSGIKRFRHPTLGERVYEYETFNLNSAPGYVLSIY 259 >Cgl1319 [K] COG1396 Predicted transcriptional regulators Length = 325 Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 109/246 (44%), Gaps = 20/246 (8%) Query: 1 VASLSGISLPWYTALEQGRDIHVSEQVLESLVRTLRLSNDERNHLLVLAN--------RF 52 VA L+G+S+ +YT LE+G VSEQVL +L L+L + E HL LA R Sbjct: 64 VAMLAGVSVDYYTRLERGNLSGVSEQVLSALATALQLDDAETQHLFDLAKLSNSPASRRK 123 Query: 53 LPPQPKADDSVPTTLQQILDRMGTYPAYIIDKRWNVLAWNKIS---------GTLCGDLS 103 P PK+ + + +IL+ M PAYI + ++LA N T+ +S Sbjct: 124 RTPAPKS--VLRPEVLRILNSMHDIPAYIRSESRDLLAANTFGRALYAPLYESTVSDGIS 181 Query: 104 RAPELERNILWRVFEVEDSKSRIVNWEDVASTMVAHFRSRFAQYMNDSWYQELFDKLYDR 163 P N+ F ++ WE ++ +VA R+ AQ ND+ + L +L + Sbjct: 182 GEPG-SINVARFTFLDPAAREFFPEWERTSADLVASLRTVAAQRPNDTLFSNLIGELVTK 240 Query: 164 SEEFRTLWDRQDVSGTMEGEQIISLPEAGLLTFHYHTFTISESSAFAMRVFTPLENLGTD 223 SE F +W +V G + I P G + + T + A+ V++ E + Sbjct: 241 SEVFAQMWADHNVRMHRTGSKKIVHPLVGEMELDFETLDLPADPDIALVVYSAAEGSTSA 300 Query: 224 EQLEAL 229 L+ L Sbjct: 301 MNLQLL 306 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,709,260 Number of extensions: 645578 Number of successful extensions: 1075 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 1072 Number of HSP's successfully gapped: 4 Length of query: 231 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 128 Effective length of database: 26,499,029 Effective search space: 3391875712 Effective search space used: 3391875712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)