BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0026.p (217 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0797 [K] COG1802 Transcriptional regulators 100 3e-21 BMEII0281 [K] COG1802 Transcriptional regulators 91 2e-18 mll6988 [K] COG1802 Transcriptional regulators 84 2e-16 AGl1259 [K] COG1802 Transcriptional regulators 84 2e-16 CC2392 [K] COG1802 Transcriptional regulators 82 5e-16 >PA0797 [K] COG1802 Transcriptional regulators Length = 240 Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 13/206 (6%) Query: 9 DTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYRTSK 68 +TL + V+ +++ I++GE P I + +L T G+SR PLR+A+ LE LL R Sbjct: 16 ETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLLVRVPH 75 Query: 69 -GWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKD 127 G S + ++I ++E+R LEG+ACRL A + + +I +R + + + Q Sbjct: 76 VGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHERDEAFQAGR 135 Query: 128 AYYL--ADKKFHNLIASEIQDFHLSKSL--ESFKV-----IQTSLTQGLYRSPDETYPEH 178 YY D FH I + L++ L E +++ IQ S T P + + EH Sbjct: 136 GYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPN---RPRQAFAEH 192 Query: 179 MAIIDAIEKRDGDLAEELMRNHIRAT 204 I+DAI RDG+LAE LMR HI A+ Sbjct: 193 HRILDAIADRDGELAELLMRRHISAS 218 >BMEII0281 [K] COG1802 Transcriptional regulators Length = 238 Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 6/195 (3%) Query: 19 LREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGL-LYRTSKGWYAKSFTL 77 LRE I G++ P ++ Q + G+SRTPLR+A+ LE +GL ++ +G S L Sbjct: 30 LRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRGVRVASADL 89 Query: 78 DDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKDAYYLADKKFH 137 +I + +R VL+G+A R A + I +RA + D AY ++ FH Sbjct: 90 TRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAYTQSNVDFH 149 Query: 138 NLIASEIQDFHLSKSLE----SFKVIQTSLTQGLYRSPDETYPEHMAIIDAIEKRDGDLA 193 + + + L + + +V S + + R+ D EH AI++AI RDG+ A Sbjct: 150 MAVMNTAGNASLIAFVPLLRMTSQVFAPSFSLSVDRARDAIR-EHAAIVEAIAARDGEEA 208 Query: 194 EELMRNHIRATIAVL 208 E L R HIRAT A L Sbjct: 209 ERLARAHIRATTARL 223 >mll6988 [K] COG1802 Transcriptional regulators Length = 220 Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 5/187 (2%) Query: 26 GEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLY-RTSKGWYAKSFTLDDMISVF 84 G ++P +I ++ +G+SR P+R+A L +GL+ R ++G T+D++ +F Sbjct: 27 GRYKPGDRLIPEEIAAEIGMSRMPVREAFRRLASDGLVVLRPNRGCVVAGLTVDELFEIF 86 Query: 85 ELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKDAYYLADKKFHNLIASEI 144 E+R+VLEGLA RL P I++E+ + + + + Q D + + ++FH I + Sbjct: 87 EIRSVLEGLAVRLAVPRIDDEEFEELDRLLERMERAGQSGGGD-WVVRHQEFHGRICALS 145 Query: 145 QDFHLSKSLESFKVIQTSLTQGLY---RSPDETYPEHMAIIDAIEKRDGDLAEELMRNHI 201 Q L + + V+ + + P EH A+I A+ D AE++M+ H+ Sbjct: 146 QRPKLIHQISALHVVIEPYMRIWFDDCNKPLSAREEHAAVIAALRSGDAHHAEQVMQEHV 205 Query: 202 RATIAVL 208 T +L Sbjct: 206 LGTAPLL 212 >AGl1259 [K] COG1802 Transcriptional regulators Length = 134 Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 0/207 (0%), Positives = 0/207 (0%), Gaps = 14/207 (6%) Query: 10 TLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYR-TSK 68 + AV + + + + + + + + + + Sbjct: 32 PMVTAVSYKSFQELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQETSGSGRIQ 91 Query: 69 GWYAKSFTLDDMISVFELRAVLEGLACRLIA----PVIEEEKIIYMRAIFQSAYQKRQDQ 124 + + + + + G Sbjct: 92 TLRVVARQKGAAVRIDAVFNIQAGQIADKDVIRKG---- 147 Query: 125 DKDAYYLADKKFHNLIASEIQDFHLSKSLESFKVIQTSLTQGL---YRSPDETYPEHM-A 180 Sbjct: 148 - 206 Query: 181 IIDAIEKRDGDLAEELMRNHIRATIAV 207 Sbjct: 207 233 >CC2392 [K] COG1802 Transcriptional regulators Length = 244 Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 21/212 (9%) Query: 13 QAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYR-TSKGWY 71 Q V + LR+MI +GE + + I + LGVSR P+R A+ LE EGL+ R ++G+ Sbjct: 10 QRVMMALRKMIASGEIKSGERIAEIPTAAALGVSRMPVRTALRSLEQEGLVVRLGARGYA 69 Query: 72 AKSFTLDDMISVFELRAVLEGLACRLIA--PVIEEEKIIYM------RAIFQSAYQKRQD 123 A+ + D + E+R VLEG A R +A + E ++ A+F + +D Sbjct: 70 ARGVSSDQIRDAIEVRGVLEGFAARRLAERGMTAETHARFVALIAEGEALFAAGRLNGED 129 Query: 124 QDKDAYYLADKKFHNLIASEIQDFHLSKSL-----ESFKVIQTSLTQGL-----YRSPDE 173 D+ A Y ++ FH+ + S + + +L E F + Y Sbjct: 130 LDRYAAY--NQAFHDTLVSAAGNGAVESALARNGFEPFAAAGALALDLMDLPAEYEHLLA 187 Query: 174 TYPEHMAIIDAIEKRDGDLAEELMRNHIRATI 205 + +H A++DA+ D + AE +MR+H A I Sbjct: 188 AHRQHQAVLDAVSCGDAEGAERIMRDHALAAI 219 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,588,722 Number of extensions: 555438 Number of successful extensions: 2538 Number of sequences better than 1.0e-05: 74 Number of HSP's gapped: 2514 Number of HSP's successfully gapped: 74 Length of query: 217 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 115 Effective length of database: 26,614,363 Effective search space: 3060651745 Effective search space used: 3060651745 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)