BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0025.p (201 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20666 [G] COG0235 Ribulose-5-phosphate 4-epimerase and relate... 93 2e-19 YPO1236 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related... 93 3e-19 BMEII1095 [G] COG0235 Ribulose-5-phosphate 4-epimerase and relat... 86 3e-17 HI1012 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 86 4e-17 PM1364 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 82 5e-16 >SMb20666 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 225 Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 8/195 (4%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 + GL G+SGNIS R++ L+T + +G L+ + R++ +G +G +P+KE Sbjct: 17 LFERGLTPGSSGNISMRLEDGGWLVTPTNASLGFLDPARISRLD--AGGRLVSGDKPTKE 74 Query: 61 IPMHAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAER---IAYVDYY 116 IP+H+A+YE R A I+H S L ++ + L + YY R A V YY Sbjct: 75 IPLHSALYETRGSARAIVHLHSTHAVALTMLPEIDARAALPPMTPYYLMRAGETALVPYY 134 Query: 117 HPGSRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARMGLETIEMTCRMAATMQMTGL 176 PG + +A+R A + ++L NHG +V S++ A E +E T ++ + + L Sbjct: 135 RPGDPAVADAIRGLAGRYSSVLLSNHGPVVAGDSLEAAVFATEELEETAKL--YLLLRNL 192 Query: 177 TPTVLKPETQQDFLQ 191 P L P+ D ++ Sbjct: 193 NPRYLSPQQVADLVE 207 >YPO1236 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 301 Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 8/160 (5%), Positives = 24/160 (15%), Gaps = 6/160 (3%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 + + + S G+ E Sbjct: 40 AQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV--ELVIFVVE 97 Query: 61 IPMHAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAERIA---YVDYY 116 E + A + + ++ + + Sbjct: 98 GTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 Query: 117 HPGSRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARM 156 + + A+ K I + + Sbjct: 158 TGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEI 197 >BMEII1095 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 224 Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 10/192 (5%) Query: 5 GLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKEIPMH 64 G G++GNIS R+ AD L+T + + +G L L +++ G G RPSKE+ MH Sbjct: 35 GYCVGSAGNISVRL-ADGYLMTPTNSCLGRLRADRLSKLD--KGWNHIGGDRPSKEVFMH 91 Query: 65 AAIYEARPDAGFIIHASPFWTTLAACSDLQIESKLFVE-SMYYAERIA----YVDYYHPG 119 A+ ARP AG ++H + T +C ++ + Y+ RI + YY PG Sbjct: 92 RAVLGARPQAGAVVHLHSTYATAISCLSSPADTMPITPLTPYFVMRIGKHLPTIPYYRPG 151 Query: 120 SRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARMGLETIEMTCRMAATMQMTGLTPT 179 + + + A+ A+ ++L NHG +V +S+ +A E +E + R++ +Q GL Sbjct: 152 DPAMEREIHDDAQNASAMLLANHGPVVSGNSLVDAVYAAEELEESARLSIMLQ--GLPAR 209 Query: 180 VLKPETQQDFLQ 191 L E +D L Sbjct: 210 KLTDEQIEDLLH 221 >HI1012 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 210 Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 8/173 (4%) Query: 5 GLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDA-AGKRPSKEIPM 63 G G +GN+S R+D + +L+T +G+ +G L + R+++ E + G +PSKE Sbjct: 21 GYTVGGAGNLSVRLDDNRVLVTPTGSSLGRLS---VERLSVLDMEGNLLGGDKPSKEAVF 77 Query: 64 HAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAERIA---YVDYYHPG 119 H A+Y+ P+ I+H S + T L+ +L + + + YY R+ + YY PG Sbjct: 78 HLAMYKKNPECKAIVHLHSTYLTALSCLDNLDPNNAIEPFTPYYVMRVGKMQVIPYYRPG 137 Query: 120 SRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARMGLETIEMTCRMAATMQ 172 S ++ E + +A +L NHG++V S + +A E +E T ++ T+Q Sbjct: 138 SPKIAEELSNRALTGKAFLLANHGVVVTGSDLLDAADNTEELEETAKLFFTLQ 190 >PM1364 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Length = 210 Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 6/171 (3%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 + G + G +GN+S R+D +L+T +G+ +G LE L +++ +GK+PSKE Sbjct: 17 LFERGYSVGGAGNLSVRLDEKRILVTPTGSSLGRLEADSLSVLDMEGNLL--SGKKPSKE 74 Query: 61 IPMHAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAERIA---YVDYY 116 H A+Y P I+H S + T L+ L ++ + + YY R+ + YY Sbjct: 75 SVFHLAMYHQNPACHAIVHLHSTYLTALSCLEGLNPDNAMKAFTPYYVMRVGKLPVIPYY 134 Query: 117 HPGSRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARMGLETIEMTCRM 167 PG + + E+A + +L NHG++V + + +A E +E T ++ Sbjct: 135 RPGDTNIARELSERALLSKAFLLANHGVVVTGTDLVDAVDNTEELEETAKL 185 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,466,658 Number of extensions: 528837 Number of successful extensions: 1730 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 1715 Number of HSP's successfully gapped: 23 Length of query: 201 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 100 Effective length of database: 26,729,697 Effective search space: 2672969700 Effective search space used: 2672969700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)