BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0598.0016.p
         (92 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0483 [K] COG2207 AraC-type DNA-binding domain-containing proteins   101   2e-22
BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing prot...    59   2e-09
BH3679 [T] COG4753 Response regulator containing CheY-like recei...    48   4e-06
SPy1587 [T] COG4753 Response regulator containing CheY-like rece...    47   5e-06
SPy1556 [T] COG4753 Response regulator containing CheY-like rece...    47   5e-06

>BH0483 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 769

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 66/81 (81%)

Query: 7   EKLESQNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVSN 66
           E+++SQ + IS++++ II  E+D+ELTL+  A RL+Y+PNYL ++FRKE  ++FSEY+S+
Sbjct: 657 ERMDSQYRTISDQIIHIIQNEFDMELTLESIAERLHYNPNYLSSIFRKETNISFSEYLSS 716

Query: 67  YRLGIAKRWLLETDMKISDIA 87
           YRL +AK+WLLET M I +IA
Sbjct: 717 YRLAMAKKWLLETSMPIREIA 737


>BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 761

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 48/76 (63%)

Query: 12  QNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVSNYRLGI 71
           Q K ++ER++ +IH++Y  +++L+ CA  L  +   L   F++  G+NF +YV+  R+  
Sbjct: 653 QQKQLAERVIAMIHEQYMADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIEK 712

Query: 72  AKRWLLETDMKISDIA 87
           AK  L+ T+ KI D++
Sbjct: 713 AKELLVNTNKKIHDVS 728


>BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 257

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 9   LESQNKNISERMMEIIH---KEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVS 65
           +E +  + S+ + E +H      D ++ L   A  ++ +P+YL  +F+++  + FSEY++
Sbjct: 145 IEKERLSSSDSIHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLT 204

Query: 66  NYRLGIAKRWLLETDMKISDIA 87
             RL  AK  L+ TD  ISDIA
Sbjct: 205 RKRLQHAKHLLVSTDRPISDIA 226


>SPy1587 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 494

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 46/78 (58%)

Query: 10  ESQNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVSNYRL 69
           E +  ++    ++ I KEY  ELTL   A RL+ +  YL   F+ E   +F++Y+++ R+
Sbjct: 376 EKRYSDLVSETIDCIRKEYHQELTLKAIADRLHVNGVYLGQCFKNETERSFTQYLNHVRI 435

Query: 70  GIAKRWLLETDMKISDIA 87
             A++ LL T+  I++IA
Sbjct: 436 QKAQQLLLYTNQSINEIA 453


>SPy1556 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 246

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query: 6   HEKLESQNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVS 65
            E +E   K +S   M I  +  D +LTL   A +L + PNYL  + +KE G+ F +Y+ 
Sbjct: 133 QELVEQPQKEVSAIAMAIHERLADSDLTLKSLAQQLGFSPNYLSVLIKKELGMPFQDYLV 192

Query: 66  NYRLGIAKRWLLETDMKISDIA 87
             RL  AK  LL +++KI +IA
Sbjct: 193 QERLKKAKLLLLTSNLKIYEIA 214


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,263,762
Number of extensions: 203248
Number of successful extensions: 497
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 9
Length of query: 92
Length of database: 38,378,431
Length adjustment: 62
Effective length of query: 30
Effective length of database: 31,227,723
Effective search space: 936831690
Effective search space used: 936831690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)