BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0009.p (390 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic... 179 6e-45 lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic... 149 8e-36 alr2722 [G] COG1653 ABC-type sugar transport system, periplasmic... 125 1e-28 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 120 3e-27 lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 118 2e-26 >AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 134 Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 0/370 (0%), Positives = 0/370 (0%), Gaps = 25/370 (6%) Query: 32 ASASAGA-----EKVKLVLWHYYEKDIE---DFVTKFNESQDEVEVTPSFVPFSDFKKQL 83 + A A + + + K ++ + FS + Sbjct: 15 SPAFAASCEKNFTVSGVPMVTA-VSYKSFQELPKAKAPAVLQKLAQAVAAEGFSGIQINK 73 Query: 84 TIGLSAGNLPDLVLVDNPDVAAFAAMGLFEDITDKVNAWAD---KDQFFEGPMKSGIYEG 140 + + + A D V Sbjct: 74 ALSSIDAHQETSGSGRIQTLRVVARQKGAAVRIDAV-FNIQAGQIADKDVIRKGICDIIK 132 Query: 141 KNYSLPFVSNCLGLFYNKELLDQAGVN---PPRTWDELKTTAKVLTK--DGVHGFATSLL 195 Sbjct: 133 192 Query: 196 KGEEGTFNFYPWLIAAGGSPEKLNSPEVASAVDFLSGLLEDGSMSKEVINIGMSDIEKQF 255 Sbjct: 193 252 Query: 256 AAGKIAMMVNGPWQTTSIEKDNPELDFGIALIPQGKQNA---SVLGGENIGMIQGKNKEA 312 Sbjct: 253 -- 310 Query: 313 AWKFISWALSADSVRSYAEVSGAFPPRKD--VAADKKYTEDPSLKVWMKQMESAMPRGPH 370 Sbjct: 311 370 Query: 371 AKWPELSTAM 380 Sbjct: 371 380 >lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 417 Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 176/345 (51%), Gaps = 26/345 (7%) Query: 40 KVKLVLWHYYE----KDIEDFVTKFNESQDEVEVTPSFVPFSDFKKQLTIGLSAGNLPDL 95 K ++V+W + K +E + +N+SQD+ +V +V + +++L G++ G LPD+ Sbjct: 33 KEEIVMWGSWSGDQIKQLEKQIDSYNKSQDKYKV--KYVMQENVEEKLLTGIAGGELPDI 90 Query: 96 VLVDNPDVAAFAAMGLFEDITDKVNAWADK-DQFFEGPMKSGIYEGKNYSLPFVSNCLGL 154 ++ D A +A G+ E + V K D F+E +K Y K Y LP +++ L Sbjct: 91 IMWDRYQTALYAPKGVLEPLDKLVKEDNVKMDDFYEESVKEMTYSDKLYGLPLLNDNRIL 150 Query: 155 FYNKELLDQAGVNPPRTWDELKTTAKVLTK-DGVHGFATSLLKGEEGTFNFYPWLIAAGG 213 FYNK+LL +AGV PP TWDEL T A+ TK DG + + G FN Y L+ AGG Sbjct: 151 FYNKKLLQEAGVKPPTTWDELATAAQKTTKWDGNKMTQAGMSLQDVGLFNLY--LMQAGG 208 Query: 214 ---SPEK----LNSPEVASAVDFLSGLLEDGSMSKEVINIGMSDIEKQFAAGKIAMMVNG 266 +P+ NS + +++ + D +V G D FAAGK AM NG Sbjct: 209 ELVTPDNKKTAFNSEQGLEVLNYWDKMQND----LKVYQRGFDDGSDAFAAGKEAMTYNG 264 Query: 267 PWQTTSIEKDNPELDFGIALIPQGKQ--NASVLGGENIGM-IQGKNKEAAWKFIS-WALS 322 PW K LD+G+ P+G +++GG + M Q ++K+ AW F+ W Sbjct: 265 PWALADYNK-VENLDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWWTTK 323 Query: 323 ADSVRSYAEVSGAFPPRKDVAADKKYTEDPSLKVWMKQMESAMPR 367 ++ +A++SG P K A D+ +T+DP+ V++ M+ A R Sbjct: 324 PENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIR 368 >alr2722 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 359 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 0/380 (0%), Positives = 0/380 (0%), Gaps = 41/380 (10%) Query: 31 NASASAGAEKVKLVLWHYYE----KDI-EDFVTKFNESQDEVEVTPSFVPFSDFKKQLTI 85 L + ++ + +E Sbjct: 37 AYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDAR--DLPTISAQH 94 Query: 86 GLSA--GNLPDLVLVDNPDVAA----FAAMGLFEDITDKVNAWADKDQFFEGPMKSGIYE 139 +A L + + + Sbjct: 95 FHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKN---VR 151 Query: 140 GKNYSLPFVSNCLGLFYNKELLDQAGVNP-PRTWDELKTTAKVLTKDG-------VHGFA 191 + + A N ++ A Sbjct: 152 QPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPG 211 Query: 192 TSLLKGEEGTFNFYPWLIAAGGSPEKLNSPEV-----ASAVDFLSGLLEDGSMSKEVINI 246 L +S A G ++ + Sbjct: 212 IILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVA 271 Query: 247 GMSDIEKQFAAGKIAMMVNGPWQTTSIEKDNPELDFGIALIPQGKQNASVLGGENIGMIQ 306 + + + +I + + ++ Sbjct: 272 MGY--GDGYPRAAPSGTPVLVN--GREVPI--VGRVAMDMICVDLGPQAQDKAGDPVILW 325 Query: 307 G--KNKEAAWKFISWALSADSVRSYAEVSGAFPPRKDVAADKKYTE----DPSLKVWMKQ 360 G Sbjct: 326 GEG 385 Query: 361 MESAMPRGPHAKWPELSTAM 380 Sbjct: 386 405 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 160/363 (44%), Gaps = 15/363 (4%) Query: 33 SASAGAEKVKLVLWHYYEKD---IEDFVTKFNESQDEVEVTPSFVPFSDFKKQLTIGLSA 89 ++SA A + ++ + Y K E+ F + + VP+ ++LT +SA Sbjct: 7 ASSADAGEARMTVAEYSAKTGPYFEEVKKAFEAENPGITLNFEVVPWDVLLQKLTTDISA 66 Query: 90 GNLPDLVLVDNPDVAAFAAMGLFEDITDKVNAWADKDQFFEGPMKSGIYEGKNYSLPFVS 149 G DL ++ + F G+ E + +N K +F E + + +GK Y LP + Sbjct: 67 GTNADLSIIGTRWLIDFVQQGIAEPLDGYMND-EFKGRFIETFLSPSVLDGKTYGLPIAA 125 Query: 150 NCLGLFYNKELLDQAGV-NPPRTWDELKTTAKVLTKDGVHGFATSLLKGEEGTFNFYPWL 208 + ++YNK+L ++AG+ NPP WDELK A + G + L E T +Y + Sbjct: 126 SVRAMYYNKDLFEKAGIKNPPANWDELKADAAKIKALGGENYGFGLQGKEIETDVYYYYA 185 Query: 209 IAAGGS-------PEKLNSPEVASAVDFLSGLLEDGSMSKEVINIGMSDIEKQFAAGKIA 261 + + G+ L++P A +++DG V + D++ F GK+ Sbjct: 186 MWSYGTEILNKDGTSGLSTPGALEAAKLYKSMIDDGLTQPGVTSYAREDVQNLFKQGKVG 245 Query: 262 MMVNGPWQTTSIEKDNPELDFGIALIPQGKQNASVLGG--ENIGMIQ-GKNKEAAWKFIS 318 MM+ P+ + I+++ P L +G+A IP G A G +++ M Q KNKE AWK + Sbjct: 246 MMITAPFLSNQIKEEAPNLKYGVAAIPAGPTGARGTYGVTDSVIMFQNSKNKEEAWKVLD 305 Query: 319 WALSADSVRSYAEVSGAFPPRKDVAADKKYTEDPSLKVWMKQMESAMPRGPHAKWPELST 378 + D + + G P K+ A Y + L + + A W E++ Sbjct: 306 FLFQKDWRAKFTQNEGFLPVNKEEAKMDYYVNNADLAAFTALLPDARFAPVIPGWEEIAD 365 Query: 379 AMS 381 S Sbjct: 366 ITS 368 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 161/331 (48%), Gaps = 23/331 (6%) Query: 51 KDIEDFVTKFNESQDEVEVTPSFVPFSDFKKQLTIGLSAGNLPDLVLVDNPDVAAFAAMG 110 K +++ KF + +EV +P+++ +L +++ + PD+V + + F G Sbjct: 47 KSLKELAQKFTKDTG-IEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFVEAG 105 Query: 111 LFEDITDKVNAWAD--KDQFFEGPMKSGIYEGKNYSLPFVSNCLGLFYNKELLDQAGVN- 167 DIT V + D FF G +K+ ++GK Y +P+ + LFY +LL + G N Sbjct: 106 ALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKKVGYNE 165 Query: 168 PPRTWDELKTTAKVLTKDG--VHGFA-------TSLLKGEEGTFNFYPWLIAAGGSPEKL 218 P+TWDEL A L+K G ++GFA T + G + N P L G+P Sbjct: 166 APKTWDELSDAALKLSKRGKDMYGFAIDPNEQTTGFIFGRQ---NGSP-LFDKDGTPV-F 220 Query: 219 NSPEVASAVDFLSGLLEDGSMSKEVINIGMSDIEKQFAAGKIAMMVNGPWQTTSIEKDNP 278 N V +L +++GS ++G+ + G + M ++GPW +++ P Sbjct: 221 NKKPFVDTVTYLDSFIKNGSAPD--TDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDTAP 278 Query: 279 ELD--FGIALIPQGKQNASVLGGENIGMIQGKN-KEAAWKFISWALSADSVRSYAEVSGA 335 ++D + A++P+ + N S LGG N+ + + N K+ A KF+ + D S+ + + + Sbjct: 279 DIDGKWATAVLPKKENNESSLGGANLSIFKYSNKKDDALKFMDYMSQPDVQLSWLKDTNS 338 Query: 336 FPPRKDVAADKKYTEDPSLKVWMKQMESAMP 366 P R D D DP KV+ +QM++A P Sbjct: 339 MPARMDAWEDDMLKNDPYYKVFGEQMKTAEP 369 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.131 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 29,946,253 Number of extensions: 1282272 Number of successful extensions: 2001 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 1925 Number of HSP's successfully gapped: 77 Length of query: 390 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 282 Effective length of database: 25,922,359 Effective search space: 7310105238 Effective search space used: 7310105238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)