BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0008.p (299 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1012 [G] COG1175 ABC-type sugar transport systems, permease c... 184 2e-46 SMb20326 [G] COG1175 ABC-type sugar transport systems, permease ... 159 6e-39 BH1245 [G] COG1175 ABC-type sugar transport systems, permease co... 158 9e-39 AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport... 156 4e-38 AGpA786 [R] COG0431 Predicted flavoprotein 156 4e-38 >AGl1012 [G] COG1175 ABC-type sugar transport systems, permease components Length = 134 Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 0/295 (0%), Positives = 0/295 (0%) Query: 2 KFASRLMKGDRVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGN 61 + L F + SFQ + ++ Sbjct: 3 HTIAVLGLITFSSPAFAASCEKNFTVSGVPMVTAVSYKSFQELPKAKAPAVLQKLAQAVA 62 Query: 62 YKGLFADPLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIP 121 +G + + + + + + I Sbjct: 63 AEGFSGIQINKALSSIDAHQETSGSGRIQTLRVVARQKGAAVRIDAVFNIQAGQIADKDV 122 Query: 122 ATITALVFKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXX 181 Sbjct: 123 182 Query: 182 XXXXXXXXXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYV 241 Sbjct: 183 242 Query: 242 MTKGGPVDATETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKED 296 Sbjct: 243 297 >SMb20326 [G] COG1175 ABC-type sugar transport systems, permease components Length = 328 Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 19/297 (6%) Query: 12 RVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNY--------- 62 R LF+ P + G+P+IR I SF N + NL EFVG NY Sbjct: 29 RSAWLFLAPTFLVLALVAGWPLIRTIYFSFTNASLT--NLSGAEFVGFANYLSWITLKSG 86 Query: 63 ----KGLFADPLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPW 118 +GL ADP +++NTL +TV S++I+ +G ++AL N F VR ILIPW Sbjct: 87 RTIYRGLLADPAWWNAVWNTLKFTVLSVSIETALGLIVALVLNAQFPGRGLVRAAILIPW 146 Query: 119 MIPATITALVFKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPF 178 IP ++A ++ +M + GI++ +L+ L + + W P +AM + ++ + W PF Sbjct: 147 AIPTIVSAKMWAWMLNDQFGILNDMLIGLGLIGEKIAWTASPDTAMIAELIVDVWKTTPF 206 Query: 179 XXXXXXXXXXXXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDL 238 P ++YE+A IDG +TLPL+RP++ +I + ++FDL Sbjct: 207 MALLILAGLQMVPGDIYEAAKIDGVHPVRVFWRVTLPLIRPALMVAVIFRMLDALRIFDL 266 Query: 239 VYVMTKGGPVDA-TETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVK 294 +YV+T P +A T+T+S ++ + F F+ GAA + +LF I+ +++ Y+ L + Sbjct: 267 IYVLT---PNNAQTKTMSVMARENLFDFDKFAYGAAASTMLFLIIATITILYMWLGR 320 >BH1245 [G] COG1175 ABC-type sugar transport systems, permease components Length = 445 Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 143/262 (54%), Gaps = 3/262 (1%) Query: 35 RNIIMSFQNVDVMTLNLPHKEFVGLGNYKGLFADPLLGTSLYNTLYYTVFSIAIQFVIGF 94 +N QN++ L F+G +Y D + ++ NTL++TV S+A + V+G Sbjct: 178 QNFYHYVQNIETAIL---ESNFIGFSHYVNYVQDSRMWAAMSNTLFFTVVSVAAELVLGL 234 Query: 95 MLALFFNKNFVLSKKVRGLILIPWMIPATITALVFKYMFSASGGIVDQILMDLHITNGPV 154 +AL N+ F VR +LIPW IP + A++++Y++ G++ L + + Sbjct: 235 AIALLINRTFKGRGLVRVAVLIPWAIPTAVAAMMWRYLYDGQFGVIAHYFEQLGLISDSS 294 Query: 155 EWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXXXXPSELYESASIDGASRWGKLRHITL 214 L AM+S+I + W P+ P+ LYE+A +DGA+R ITL Sbjct: 295 VLLSTGAGAMFSIIFADVWKTTPYMALLLLAGLQTIPNSLYEAAKVDGANRIQTFFKITL 354 Query: 215 PLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPVDATETLSTLSYKLSFSEFNFSQGAAV 274 PLL+ +I L+ + F+VFDL++V+T GGP ++TE++S +Y+ FS+ NF G+A+ Sbjct: 355 PLLKSAILVALLFRTLDAFRVFDLIFVLTGGGPANSTESISIYAYRTLFSQQNFGAGSAL 414 Query: 275 ANILFAILFVVSLAYLKLVKED 296 + I+F + ++S A++K + D Sbjct: 415 SVIVFLSVALISFAFIKFIGSD 436 >AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 12/276 (4%), Positives = 38/276 (13%), Gaps = 7/276 (2%) Query: 16 LFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNYKGLFADPLLGTSL 75 + + + V + + + + A Sbjct: 43 IRWGVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAA---KAKEMTARFGIARSYGSYED 99 Query: 76 YNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPATITALVFKYMFSA 135 + I + + Sbjct: 100 LLADPEIDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPV 159 Query: 136 SGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXXXXPSELY 195 + + + + + ++ S+ Sbjct: 160 AEAFMVRHHPQWKK--AHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDV 217 Query: 196 ESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPVDATETLS 255 +I+ A + L S F + + T Sbjct: 218 GCYAINTARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQK 277 Query: 256 TLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLK 291 A A+ ++ Sbjct: 278 VTVLGTRGRLEIPIPFNAPADEPTVLI--FDDGRDL 311 >AGpA786 [R] COG0431 Predicted flavoprotein Length = 323 Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 156/276 (56%), Gaps = 7/276 (2%) Query: 16 LFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNYKGLFADPLLGTSL 75 LFV P + F+ FT PI+ ++ +SF+ + ++ N+P FVG NY+ L A L SL Sbjct: 43 LFVAPLMIFIALFTYIPILASLNLSFREWNFLSPNMP---FVGFRNYEQLLASRDLWNSL 99 Query: 76 YNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPATITALVFKYMFSA 135 + T + V S+ ++ + ++A + + V + +RG + +P + A+VF ++FS Sbjct: 100 WVTTLFAVLSVPLRLGLALVIAAYLVRESVHVRLLRGALFLPSVTSTVSIAVVFSWVFST 159 Query: 136 SGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXXXXPSELY 195 G+ + +L + G V+WL +P A+W LI N+W + + P ELY Sbjct: 160 DYGMANALLGTFGL--GKVQWLQNPHLALWVLIFVNTWKQIGYDIVIYIAGLQAIPRELY 217 Query: 196 ESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPVDATETLS 255 ++A++DG R R IT+PL+ P+ +L++ I F+VF +V VMTKGGP AT+ L Sbjct: 218 DAAAVDGGKRLHVFRRITMPLVMPTTYFLLVISVIEAFQVFTIVNVMTKGGPAGATDMLV 277 Query: 256 TLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLK 291 +L Y++ F F+ +G+A+A +LF +L V LA LK Sbjct: 278 SLLYEIGFVLFDIGRGSALAVLLFILL--VGLAILK 311 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,703,577 Number of extensions: 802753 Number of successful extensions: 2825 Number of sequences better than 1.0e-05: 200 Number of HSP's gapped: 2573 Number of HSP's successfully gapped: 201 Length of query: 299 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 193 Effective length of database: 26,153,027 Effective search space: 5047534211 Effective search space used: 5047534211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)