BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0007.p (269 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0711 [G] COG0395 ABC-type sugar transport system, permease co... 172 5e-43 BS_yurM [G] COG0395 ABC-type sugar transport system, permease co... 157 2e-38 AGl1015 [G] COG0395 ABC-type sugar transport system, permease co... 147 2e-35 lin2970 [G] COG0395 ABC-type sugar transport system, permease co... 140 2e-33 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 139 6e-33 >SMa0711 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 94/262 (35%), Positives = 143/262 (54%), Gaps = 2/262 (0%) Query: 8 ALICIVFLFPLYWMIITSFKTELEIFQTPISFFPKSINFNAYFEQVREDYNIFRNFLNSI 67 A++C V LFP+YW+ +T+ T EI Q P SF+P ++ F +V + IF NS Sbjct: 16 AVVCGVLLFPIYWLFVTALSTLAEIRQLPPSFWPAEPQWST-FAKVGTERPIFLWLWNST 74 Query: 68 IISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFIIFKNMGL 127 + + ++ +++ +S+ A Y+L+RF KG + + L L +MLP +L + PLF IF++MGL Sbjct: 75 LAALGSVALSMVVSVFAGYSLSRFSVKGGRSLGLFILTAKMLPATLLVIPLFGIFRSMGL 134 Query: 128 YNTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXXXXXXXX 187 + F+ +L+ YF TIPREL++AA VDGC+ A R Sbjct: 135 IGSLWSLVLAHATLIIPFTTWMLKGYFDTIPRELEQAAMVDGCSPLGALFRVVLPVATPG 194 Query: 188 XXXXXXFSTLFAWADLMYAFTFI-NKQNMWPVTSGVFNFMQRYGTQWNNVMAFGVVSVLP 246 ++ + +WAD YA TF+ N Q W G+ Y T WN + A V LP Sbjct: 195 LAATALYAFVLSWADYAYARTFLTNAQGSWTANLGITTMKGEYVTDWNEISAAAVFIALP 254 Query: 247 IILLFTFLQKYIISGLTNGAIK 268 IIL++ FL++Y++ GLT GA K Sbjct: 255 IILIYLFLERYLVGGLTAGAEK 276 >BS_yurM [G] COG0395 ABC-type sugar transport system, permease component Length = 300 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 143/265 (53%), Gaps = 11/265 (4%) Query: 9 LICIVFLFPLYWMIITSFKTELEIFQT----PISFFPKSINFNAYFEQVREDYNIFRNFL 64 L I +PL WM++++FK +IF+ P S+ P+ NF + + Q Y F+ Sbjct: 43 LYLIAIAYPLLWMVMSAFKNSDDIFEHSWSLPSSWHPE--NFVSAWNQGISSY-----FM 95 Query: 65 NSIIISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFIIFKN 124 NS+I++ VI V +S AAY L+RF FKG+ ++ L ML ++L PL+ I ++ Sbjct: 96 NSVIVTALTCVITVFISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSIIQS 155 Query: 125 MGLYNTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXXXXX 184 +GLYNTY F+++++R+YF++I +EL+EAA +DGC F F R Sbjct: 156 LGLYNTYWALILPYAAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMS 215 Query: 185 XXXXXXXXXFSTLFAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMAFGVVSV 244 + W + M+A FI+ +N+ + +G+ F T W ++A +S Sbjct: 216 VPILVTSGILTAYHTWNEFMFAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLTISA 275 Query: 245 LPIILLFTFLQKYIISGLTNGAIKG 269 PII+LF +QKY + G+ +G++KG Sbjct: 276 APIIILFLLMQKYFVRGIASGSVKG 300 >AGl1015 [G] COG0395 ABC-type sugar transport system, permease component Length = 134 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 0/254 (0%), Positives = 0/254 (0%), Gaps = 2/254 (0%) Query: 16 FPLYWMIITSFKTELEIFQTPISFFPKSINFNAYFEQVREDYNIFRNFLNSIIISGAAMV 75 + + T + K+ F + +S Sbjct: 23 EKNFTVSGVPMVTAVSYKSFQELPKAKAPAVLQK-LAQAVAAEGFSGIQINKALSSIDAH 81 Query: 76 IAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFIIFKNMGLYN-TYLXX 134 Sbjct: 82 141 Query: 135 XXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXXXXXXXXXXXXXXF 194 Sbjct: 142 201 Query: 195 STLFAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMAFGVVSVLPIILLFTFL 254 Sbjct: 202 261 Query: 255 QKYIISGLTNGAIK 268 Sbjct: 262 275 >lin2970 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 133/268 (49%), Gaps = 2/268 (0%) Query: 3 YNLAAALICIVFLFPLYWMIITSFKTELEIFQTPISFFPKSINFNAYFEQVRED-YNIFR 61 Y A +CI LFP M++TSFK+ E T +FFPK F Y + D + Sbjct: 17 YVTMVAFLCIT-LFPFAIMLMTSFKSSKEAISTHPTFFPKDFTFQHYIDIFNPDIFPFLT 75 Query: 62 NFLNSIIISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFII 121 F NS+++S A IAV L I AYAL++ RFKGR + SF M L + PLF I Sbjct: 76 YFKNSLVVSVFAAGIAVVLGILGAYALSKLRFKGRMTINASFYTVYMFSGILLIVPLFKI 135 Query: 122 FKNMGLYNTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXX 181 ++GLY+T +V +L++YF TIP +++EAA +DG N F +R Sbjct: 136 ISSLGLYDTETALIITMVVQTLPTAVFMLKSYFDTIPTDIEEAAMMDGLNRFQIILRIIV 195 Query: 182 XXXXXXXXXXXXFSTLFAWADLMYAFTFINKQNMWPVTSGVFNFMQRYGTQWNNVMAFGV 241 + + AW D ++A F++ + + G+ W +MA + Sbjct: 196 PLAISGIVSVFVYCFMVAWNDYLFASIFLSSSEKFTLPIGLNTLFSTPDYIWGRMMAASL 255 Query: 242 VSVLPIILLFTFLQKYIISGLTNGAIKG 269 V+ LP+++++ +++I LT+G +KG Sbjct: 256 VTALPVVIMYAISERFIKGNLTDGGVKG 283 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 7/261 (2%) Query: 13 VFLFPLYWMIITSFKTELEIFQTPISFFPKSINFNAYFEQ----VREDYNIFRNFLNSII 68 + ++P+ WM+ +S K EIF S P ++ Y + R ++I+ F NS I Sbjct: 23 IMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIY--FKNSFI 80 Query: 69 ISGAAMVIAVALSIPAAYALARFRFKGRKLVILSFLITQMLPTSLTLTPLFIIFKNMGLY 128 I+ + ++ A+ S AY AR +FK +K++ + T MLP +TL P +I+F N+G Sbjct: 81 ITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWV 140 Query: 129 NTYLXXXXXXXXXXXXFSVLILRTYFVTIPRELDEAAKVDGCNVFTAFVRXXXXXXXXXX 188 NT+ F + +L + IPRELDEAA +DGC+ F F R Sbjct: 141 NTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPAL 200 Query: 189 XXXXXFSTLFAWADLMYAFTFINKQNMWPVTSGVFNFMQ-RYGTQWNNVMAFGVVSVLPI 247 F+ ++ W D + ++NK ++ V G+ NFM GT W ++A +S+LP Sbjct: 201 VTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQ 260 Query: 248 ILLFTFLQKYIISGLTNGAIK 268 ++F F Q+Y++ G++ +K Sbjct: 261 FIIFLFFQRYLVEGISTTGLK 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.333 0.144 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,432,061 Number of extensions: 525160 Number of successful extensions: 2518 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 2171 Number of HSP's successfully gapped: 148 Length of query: 269 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 164 Effective length of database: 26,268,361 Effective search space: 4308011204 Effective search space used: 4308011204 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 115 (48.9 bits)