BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0598.0006.p
         (662 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0706 [G] COG2730 Endoglucanase                                      53   1e-06

>CAC0706 [G] COG2730 Endoglucanase
          Length = 722

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 23/276 (8%)

Query: 385 MLVNKNGKAMDLIGGNQNNGAVINQWAYDYNGPNQRWSVIPAGNGHFRIASSVSGKYAAV 444
           ++ +  GK +++   +  +GA I +   D    +++W +  +GNG ++I S++S    ++
Sbjct: 423 IISSSTGKVLNVRNYSSQSGAQIEELV-DVGALSEQWKIADSGNGSYKITSALSN--LSL 479

Query: 445 QGNSTSDGAQLVSAPYEEGNAFQQWDFVDAGNGWFKIVNVGSGKVLDVDKNSLANEAKMQ 504
            G  +++G  +    Y  G   QQW+        +KI N  S   L ++   + + A +Q
Sbjct: 480 DGGVSTEGTDVKQYQYA-GAENQQWNIEKINANTYKITNKKSN--LALETTGVYDSADIQ 536

Query: 505 QWAWTGAECQYWRIQPQGDYYIQAEHSGKYLNAGGAGTANETPVIQFTFENNIWFKWRFE 564
            W +TG   Q W I                +NAG   T         T   N        
Sbjct: 537 LWNYTGKGTQQWIISD--------------VNAGTNTTPTTGGNTTPTTGGNTTPTTGSA 582

Query: 565 STGEGYYKVLNLNASNKVADVSNVSTADGAKVHLWDDVNAGNQQVRLVPQQDGSFKLFFK 624
                 YK+++ N + KV +V N S+  GA++    DV A +++ ++    +GS+K+   
Sbjct: 583 IDNSKTYKIISQN-TGKVLNVRNYSSESGAQIEELVDVGALSEEWKITNSGNGSYKITSA 641

Query: 625 HSNKAWDIEEFSRNNEARLTQYTEVTADNQKFYLER 660
            SN + D    +  ++ +  QYT   A++Q++ +E+
Sbjct: 642 LSNFSLDAGTSTEGSDVKQYQYT--GAESQQWNIEK 675


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.131    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 53,511,223
Number of extensions: 2402669
Number of successful extensions: 3132
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3115
Number of HSP's successfully gapped: 5
Length of query: 662
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 549
Effective length of database: 25,345,689
Effective search space: 13914783261
Effective search space used: 13914783261
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 119 (50.4 bits)