BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0598.0003.p
         (184 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1196 [L] COG0582 Integrase                                          82   7e-16
SP1159 [L] COG0582 Integrase                                           79   4e-15

>SPy1196 [L] COG0582 Integrase
          Length = 356

 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 2/136 (1%)

Query: 13  GNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVKESQETIANRIEG 72
           G  + TINR LS+L SL+ YL  + E    +PY  RNVM K+     KE+  + A  I+ 
Sbjct: 100 GLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQ 159

Query: 73  KILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLILGSGLRLSEVAGI 132
           K+   D+   F  +V  ++ +K   N+   +F + N+ERD AI++L+L SG+RLSE   +
Sbjct: 160 KLFLGDETLAFLDYVDKEYEQKL-SNRAKSSFRK-NKERDLAIIALLLASGVRLSEAVNL 217

Query: 133 NMDDLDMNKALVRVIR 148
           ++ D+++N  ++ VIR
Sbjct: 218 DLKDVNLNMMIIEVIR 233


>SP1159 [L] COG0582 Integrase
          Length = 356

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 80/136 (58%), Gaps = 2/136 (1%)

Query: 13  GNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVKESQETIANRIEG 72
           G  + TINR LS+L SL+ YL  + E    +PY  RNVM K+     KE+    A  I+ 
Sbjct: 100 GVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQ 159

Query: 73  KILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLILGSGLRLSEVAGI 132
           K+   D+ E F  ++  +  ++   N+ + +F++ N+ERD AI++L+L SG+RLSE   +
Sbjct: 160 KLFLGDETEGFLTYIDQEHPQQL-SNRALSSFNK-NKERDLAIIALLLASGVRLSEAVNL 217

Query: 133 NMDDLDMNKALVRVIR 148
           ++ DL++   ++ V R
Sbjct: 218 DLRDLNLKMMVIDVTR 233


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.137    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,311,985
Number of extensions: 410609
Number of successful extensions: 844
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 2
Length of query: 184
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 84
Effective length of database: 26,845,031
Effective search space: 2254982604
Effective search space used: 2254982604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)