BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0029.p (312 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 174 2e-43 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 171 1e-42 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 171 2e-42 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 167 2e-41 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 167 3e-41 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 166/291 (57%), Gaps = 9/291 (3%) Query: 23 QDRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFT 82 ++R+ ++++Y + + ++ + PF++V+A S + V + P F+LD Y IF+ Sbjct: 2 KNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFS 61 Query: 83 YGSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIP 142 + +S TVIGT + S++AY L+R D R+ + + TM +GG+IP Sbjct: 62 TDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIP 121 Query: 143 GFILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRV 202 F+++K L L+D++ ILP ++AFN+ ++++F +P +L+ESAK+DG ND I++++ Sbjct: 122 TFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKI 181 Query: 203 ILPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQD 262 +LPL PA+AT++LF AV WN++ L+ + ++ + +L+ +S Q Sbjct: 182 VLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSA-----KWPIQVLLRQIVIVSSGMQ- 235 Query: 263 AANMAERMSQISP--ESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVK 311 +M+E S P +++KMA YPF+QK+F KG LG+VK Sbjct: 236 -GDMSEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/288 (31%), Positives = 161/288 (55%), Gaps = 4/288 (1%) Query: 24 DRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTY 83 R+ I Y + + +++ PF++++A S + ++ ++P F+LD Y IF+ Sbjct: 9 SRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFST 68 Query: 84 GSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPG 143 + IS L TV+GT + S++AY L+R D RR + + TM +GG+IP Sbjct: 69 DIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPT 128 Query: 144 FILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVI 203 F++++ L L+DT+ I+P ++AFN+ ++++F +P +L+ESAK+DG ND I++R++ Sbjct: 129 FLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIV 188 Query: 204 LPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQDA 263 PL PA+AT++LF AV WN++ L+ ++ S+ +Q L +I+ S+ D Sbjct: 189 FPLSMPAIATISLFYAVTYWNTFMQAILYL-NDSSMWPIQVLLRQIV---IMSSGMQGDL 244 Query: 264 ANMAERMSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVK 311 + +++KMA YPF+QK+F KG LG+VK Sbjct: 245 TELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 157/288 (54%), Gaps = 8/288 (2%) Query: 25 RILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTYG 84 R+ ++ + V +TI PFL ++A S + + ++P+ FTLD Y +F+ Sbjct: 14 RVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTP 73 Query: 85 SLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPGF 144 + + +S TV+GT L +AY LA+ + R + + +M +GG+IP + Sbjct: 74 TFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTY 133 Query: 145 ILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVIL 204 +++K L L+DT+ ILP ++ FN+ +I++F LP L+ESAK+DG ++ ++WR+ L Sbjct: 134 LVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIAL 193 Query: 205 PLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQDAA 264 PL KP +AT ALF AVG WN +F L+ ++ + LQ L ++ + +A+N Sbjct: 194 PLSKPVIATFALFYAVGIWNDFFHALLYI-NDSAKWPLQMVLRQVTILSDLTATNGDTMQ 252 Query: 265 NMAERMSQISPES-VKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVK 311 N + PE +K+A YPFLQK+F KGM +G+VK Sbjct: 253 N------AVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 167/288 (57%), Gaps = 11/288 (3%) Query: 31 VYFSMT--VVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTY-GSLI 87 ++FS+ ++ + I PF+ V+ IS+ D ++ G + +P QF LD + + + ++ Sbjct: 25 IFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDKIL 84 Query: 88 TGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPGFILM 147 IS TV+GT+ + + AY ++R+ F+ RRF +IF+ ++M GL+PG+I++ Sbjct: 85 QALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMV 144 Query: 148 -KDLHLIDTFAVYILPGLVSAFNVFVIRSFIDG-LPYALQESAKLDGANDFTIYWRVILP 205 + L L DT I+P L+S FN+ ++RSF +P A+ ESA++DGA++ I++++ LP Sbjct: 145 TRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLP 204 Query: 206 LCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQDAAN 265 L P +AT+ L A+G WN WF+ L+ S ++L LQY LM+I Q+ A A Sbjct: 205 LSLPGIATITLLTALGFWNDWFNALLYIKS-DNLYPLQYLLMQIQQNMDYIAK----AVG 259 Query: 266 MAERMSQISP-ESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 + ++ P E+ +MA YPF Q+YFVKG+T+G VK Sbjct: 260 LIGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVKE 307 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 151/278 (54%), Gaps = 14/278 (5%) Query: 40 VLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTYGSLITGFKISFLRTVI 99 VL I P +++ A+SL+ S + P FTLD Y + I F IS +R V+ Sbjct: 25 VLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFLISVVRVVL 84 Query: 100 GTIAGLVSGSML--AYTLARSD--FQARRFISIFLAVTMYVTGGLIPGFILMKDLHLIDT 155 GT+ + G+ML AY L++ D F+ R+F F +TM GGL+P ++++ L L +T Sbjct: 85 GTVISM--GAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTGLGLTNT 142 Query: 156 FAVYILPGLVSAFNVFVIRSFI-DGLPYALQESAKLDGANDFTIYWRVILPLCKPALATV 214 +LP ++AFN+ ++ +F +P +L+ESA +DGAN F I+ ++ LP+ PA+ATV Sbjct: 143 IWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISVPAIATV 202 Query: 215 ALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSASNSQDAANMAERMSQIS 274 +LF V WNSWFD ++N + Y L LQ+ SQ AE + +S Sbjct: 203 SLFTMVFHWNSWFDGMIYNNDARN-----YPLQTFLQTIVVQQDFSQITD--AETLRNLS 255 Query: 275 PESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 +V+ A YPF+QKYFVKG+ LGA K Sbjct: 256 QRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEKE 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,468,830 Number of extensions: 708204 Number of successful extensions: 4449 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 4325 Number of HSP's successfully gapped: 152 Length of query: 312 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 206 Effective length of database: 26,153,027 Effective search space: 5387523562 Effective search space used: 5387523562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)