BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0022.p (304 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1899 [K] COG2207 AraC-type DNA-binding domain-containing proteins 152 7e-37 BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins 77 4e-14 all1651_2 [K] COG2207 AraC-type DNA-binding domain-containing pr... 73 6e-13 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 73 7e-13 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 72 1e-12 >SP1899 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 286 Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 145/267 (54%), Gaps = 14/267 (5%) Query: 13 ELHLTQFGIEECIPGHFFGPAVRNHYLLHYVLSGEGVFEVGGSRYRLRKGQGFLIFPDVV 72 +L L+ +G EEC P + FGPA+R+ Y+LHY+ G+G F G L++G FL+ P+ + Sbjct: 13 DLALSFYGYEECTPNYSFGPAIRDTYVLHYITKGQGKFHYKGKIVDLKEGDFFLLKPEEL 72 Query: 73 TYYQADTANPWSYCWVGFNGASA------ELLLKQAGLTKSSPIFLYDRDDMIYQYLQLM 126 T+YQAD+ PW+Y W+G G A + Q+ L +S +I ++ Sbjct: 73 TFYQADSKEPWAYYWLGITGGKAPDYFALSQISDQSYLIQSETCHTQTTAKLISDIVRFA 132 Query: 127 NESRGFHKARETRXXXXXXXXXXXXVEFGPVASPELK---GTRTEIYVEEVKDFIEMNYP 183 + K+ E G +A + K + ++Y+ E K I+ +YP Sbjct: 133 QIT----KSSELAQLHIMGQLHELMFHLGTIAPNQKKKNISSTHQLYL-ECKRLIDSHYP 187 Query: 184 QKITIEDIAQFIGLNRSYLCSLFKQRKQISIQDYLIRYRINKACEMMGNAELSIADISRS 243 Q +TI+D+A+ + ++RSYL S+FK+ +S ++YL+ R+++A +++ N + SI I+ S Sbjct: 188 QSLTIQDLAKELSVHRSYLSSVFKEFNTLSPKEYLLYVRMHRARQLLENTQESIKVIAYS 247 Query: 244 VGYNDALLFSKMFKKVKGSAPKHYRAE 270 VG++D L FSK +K+ P H R E Sbjct: 248 VGFSDPLHFSKAYKQYFNQTPSHTRKE 274 >BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 278 Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 70/112 (62%) Query: 167 TEIYVEEVKDFIEMNYPQKITIEDIAQFIGLNRSYLCSLFKQRKQISIQDYLIRYRINKA 226 +++ +E+V ++I +Y + +T++ +A G+ LFK+ + DYLI+YR+ +A Sbjct: 166 SQLVIEQVVEYIHHHYMEPMTVKKLADMSGMGVKPFSYLFKKYIGMFPIDYLIQYRLKRA 225 Query: 227 CEMMGNAELSIADISRSVGYNDALLFSKMFKKVKGSAPKHYRAEIQAQMQND 278 ++ ++ SIADI+ S+GY DAL FS++FKK G +P +RA++ +D Sbjct: 226 KNLLVSSNSSIADIAESIGYLDALYFSRLFKKHIGCSPTAFRAQMGNCPSDD 277 >all1651_2 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 147 Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 68/105 (64%) Query: 169 IYVEEVKDFIEMNYPQKITIEDIAQFIGLNRSYLCSLFKQRKQISIQDYLIRYRINKACE 228 + + + +FIE NY I++ D+AQ +G + +YL +L K+R Q++I D+++ ++ +A Sbjct: 38 VQIRPIFEFIEQNYHLPISLNDVAQAVGYSPAYLTNLVKRRTQLTIIDWILERKMLEARS 97 Query: 229 MMGNAELSIADISRSVGYNDALLFSKMFKKVKGSAPKHYRAEIQA 273 ++ N++ S+ +I+ +VG+ DA FS+ F + +P+ +R + Q+ Sbjct: 98 LLINSDKSVTEIAMAVGFTDAYYFSRRFSQYHKLSPRSWRQKYQS 142 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 62/97 (63%) Query: 175 KDFIEMNYPQKITIEDIAQFIGLNRSYLCSLFKQRKQISIQDYLIRYRINKACEMMGNAE 234 +D++ ++ + +T++D+A+ IGL+ Y+ LFK+R ++ +Y+ + R+ A +++ + Sbjct: 421 RDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQ 480 Query: 235 LSIADISRSVGYNDALLFSKMFKKVKGSAPKHYRAEI 271 S+ +I+ +GY D FS++FKK+ G +P YR I Sbjct: 481 KSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRKSI 517 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 59/98 (60%) Query: 171 VEEVKDFIEMNYPQKITIEDIAQFIGLNRSYLCSLFKQRKQISIQDYLIRYRINKACEMM 230 + E +I+ + QKI ++D+A+ + LN SYL +LFK++ ++ +YL R R+ A ++ Sbjct: 156 IHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLL 215 Query: 231 GNAELSIADISRSVGYNDALLFSKMFKKVKGSAPKHYR 268 + + I+DI+ GY A F K+FK+ +G P YR Sbjct: 216 VSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYR 253 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,504,907 Number of extensions: 826785 Number of successful extensions: 2272 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 2275 Number of HSP's successfully gapped: 69 Length of query: 304 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 198 Effective length of database: 26,153,027 Effective search space: 5178299346 Effective search space used: 5178299346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)