BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0020.p (414 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic ... 96 1e-19 all1916 [G] COG1653 ABC-type sugar transport system, periplasmic... 95 2e-19 lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 82 2e-15 alr4277 [G] COG1653 ABC-type sugar transport system, periplasmic... 67 7e-11 SMa1364 [G] COG1653 ABC-type sugar transport system, periplasmic... 66 1e-10 >PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 464 Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 157/349 (44%), Gaps = 40/349 (11%) Query: 39 VEVTMAYW-ANSAEQKNFEFMVKGIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXXX 97 V + A W A E KN++ M++ E++ P +KVK + + F + Sbjct: 68 VFIRFAGWSAGETEMKNYQRMIELFEKENPNIKVKYEV--ITQMFHENILASFGAGVAPD 125 Query: 98 XXXMSDEGNYEYIAKGVLEPLDELIKTVGFDKTRITTSLYKGWTDSGKLYGIPYDSSTSM 157 + +I KG L P+ EL +K L + + +GKLYG+P D S Sbjct: 126 VFYVDSSWAPIFIEKGALYPISELADESFINK--FYPFLLEPFKKNGKLYGLPKDWSMLA 183 Query: 158 LAINKKMFDQSGITKYPETMDEMLELAKAMT-KDGVKGIVGSIDPFHITQYVHAFGGG-- 214 L NKK+F+Q+G+TK PET DE+LE AK +T K G G+ + F+ V G Sbjct: 184 LFYNKKLFEQAGLTKPPETWDELLEYAKIITEKTGKPGLAIYLGGFNRYVPVAVSNGAPK 243 Query: 215 -WNFGKT-----INSAENVKGLQFFVDMYLKSKV----------AIAPIEIGAPWDGEVF 258 W F K ++ + L +++++Y K KV +AP ++GA W G+ F Sbjct: 244 PW-FEKPEDASWFDNPVVRETLTWYINLYRKGKVEREKKGLPPYVVAPEDVGAGWLGDAF 302 Query: 259 SKEKGAMSTAGPWYVGYLKEANPELEL-----IALPMPKG-TVDAQSAYSHGLSILQGSK 312 ++K AM +G W + +L + P + IA P+P G Y+ L I +K Sbjct: 303 GQQKVAMVISGNWMIPFLADQFPNFKYGEDWDIA-PLPAGKNGRVTMVYTVILGINSKTK 361 Query: 313 NKEAAMKVISYALRDEAQTDAIETVGYSPAVSALLP--KYLEKYPELKP 359 + + A K + + L Q + + G + LP K E P+L P Sbjct: 362 HPKEAWKFVEFILGPRGQKELVVKAGQT------LPSMKGFENDPDLWP 404 >all1916 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 169/387 (43%), Gaps = 27/387 (6%) Query: 38 PVEVTMAYWANS-AEQKNFEFMVKGIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXX 96 PV V ++ W S EQK + +++ E ++P +KVK + SD++ Sbjct: 36 PVTVKLSGWGGSPVEQKLLKQVLQDFEAQHPHIKVKYE--VISDQYMDVIKTRLIGEAAP 93 Query: 97 XXXXMSDEGNYEYIAKGVLEPLDELIKTVGFDKTRITTSLYKGWTDSGKLYGIPYDSSTS 156 + +++ VLEPLD I T FD + +L + +YG P D ST Sbjct: 94 DVFYLDALEAPFLMSQNVLEPLDNYI-TPEFDLSDFEANLLDNFKYQNHIYGFPKDYSTL 152 Query: 157 MLAINKKMFDQSGITKYPETMDEMLELAKAMTKDGVKGIVGSIDPFHITQY-VHAFGG-- 213 L NKK F +G++ P T E+ ++ +T K G Y + AFGG Sbjct: 153 ALFYNKKAFAAAGLSSPPATWTELRTYSQQLTGKLNKYGFGEAPELARQVYKIKAFGGEV 212 Query: 214 -GWNFGKTINSAENVKGLQFFVDMYLKSKVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWY 272 N T S ++G Q +D Y K K + ++G E+F +EK AM G W Sbjct: 213 INQNGYATFASEAGLRGFQLVIDQYQKDKSSAQKSDVGTNSGSEMFGQEKVAMVIEGNWA 272 Query: 273 VGYLKEANPELELIALPMP-----KGTVDAQSAYSHGLSILQGSKNKEAAMKVISYALRD 327 + YL+E P+LE +P KGT+ AY + + S++K A ++ISY L Sbjct: 273 IPYLQETFPQLEFATAQLPTINNKKGTMVFTVAY----VMSKQSQHKAEAWELISY-LTG 327 Query: 328 EAQTDAIETVGYS-PAVSALLPKY-LEKYPELKPVFDNMEKAGMPFAYPEQTKAFHADLL 385 +A + G++ P ++ K+ E+ P P+ AG+ A P Q + A ++ Sbjct: 328 KAGMQKWTSTGFALPTRKSVSQKFGYEQDPLRSPLV-----AGVDDATPWQVGKYPAPIV 382 Query: 386 KGVEEIIFKN--GKLPVKELLDELQEK 410 + G+ P+K+ + Q + Sbjct: 383 NNFDNQFVSALLGQQPLKQAMLRAQNQ 409 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 155/354 (43%), Gaps = 29/354 (8%) Query: 37 DPVEVTMAYWANSAEQKNFEFMVKGIEEKYPEVKVKLQQYPTSDEFWKXXXXXXXXXXXX 96 D E+T ++ A+ K + MVK E++ P++KV +Q +D F K Sbjct: 29 DKTEITYYQFSAPADGKALDKMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPD 88 Query: 97 XXXXMSDEGNYE----YIAKGVLEPLDELI-KTVGFDKTRITTSLYKGWTDSGKLYGIPY 151 E NYE Y KGVL L I K FD + + Y + GK YG+ Sbjct: 89 AF-----ELNYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVE 143 Query: 152 DSSTSMLAINKKMFDQSGITKYPE---TMDEMLELAKAMTKDGVKGIVGSIDPFHITQY- 207 S + NK +FD++G+ +YP T + AK +T D + G+ P + ++ Sbjct: 144 SFSNVVTIYNKDLFDKAGV-EYPTADWTWKDEEAAAKKLT-DAKNKVWGTSQPVTMNEFF 201 Query: 208 -VHAFGGGWNFGK-----TINSAENVKGLQFFVDMYLKSKVAIAPIEIGAPWDGEVFSKE 261 V A GG F K TINS ENV+ L + +SKVA +P ++ ++F Sbjct: 202 KVAAQNGGSIFDKDMTKTTINSPENVEALTHLTNEVTESKVAPSPSDLSGQLPEDLFMNG 261 Query: 262 KGAMSTAGPWYVGYLKEANPELELIALPMPKGTVDAQSAYSHGLSILQGSKNKEAAMKVI 321 + AM G W ++A + ++ K A +++G+ + + S KEAA K Sbjct: 262 QIAMLHTGIWLFDMFQDAPFKWDVQVEAGNKQK--ATHFFANGIGVSKDSDKKEAAFKFA 319 Query: 322 SY-ALRDEAQTDAIETVGYSPAVS--ALLPKYLEKYP--ELKPVFDNMEKAGMP 370 S+ + EA I PA +L YL+ P + VF++++ +P Sbjct: 320 SFMSANKEAAKIRIANNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLP 373 >alr4277 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 359 Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 0/248 (0%), Positives = 0/248 (0%), Gaps = 26/248 (10%) Query: 115 LEPLDELIKTVGFDKTRITTSLYKGWTDSGKLYGIPYDSSTSMLAINKKMFDQSGITKYP 174 + + ++ ++ SG Sbjct: 142 HRLTQCKNVRQPV-NIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLW 200 Query: 175 ETMDEMLELAKAMTKD-------GVKGIV-----GSIDPFHITQYVHAFGGGW------- 215 + S+ I H G Sbjct: 201 PQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWV 260 Query: 216 NFGKTI-NSAENVKGLQFFVDMYLKSKVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWYVG 274 + T G + + V + E+ G V Sbjct: 261 SERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVP--IVGRVAMDMICVDLGPQAQDKA 318 Query: 275 YLKEANPELELIALPMPKGTVDAQSAYSHGLSILQGSKNKE-AAMKVISYALRDEAQTDA 333 L + SAY + K Sbjct: 319 GDPVILWGEGL--PVERIAEMTKVSAYELITRLTSRVAMKYV 376 Query: 334 IETVGYSP 341 Sbjct: 377 384 >SMa1364 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 406 Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 13/174 (7%) Query: 128 DKTRITTSLYKGWTDSGKLYGIPYDSSTSMLAINKKMFDQSGITKYPETMDEMLELAKAM 187 D + +L +T GKLY IP D +T + NK +FD +G+ YP D L + + Sbjct: 105 DVSGFAANLLTAFTYDGKLYSIPKDFNTLAIHFNKDIFDDAGV-GYPSDDDTWTTLQEKL 163 Query: 188 TKDGVKGIVGSIDPFHITQYVHAFGG-----GWN----FGKTINSAENVKGLQFFVDMYL 238 V + +D + FG GW+ GKT+ + F+ + + Sbjct: 164 V--AVNKSLPEVDGLCVVPEYARFGAFALSTGWSPFDARGKTVLDKRFRRAFDFYTGL-V 220 Query: 239 KSKVAIAPIEIGAPWDGEVFSKEKGAMSTAGPWYVGYLKEANPELELIALPMPK 292 KS A+ + G W G + E+ A++ G W + L+++ P + L + MPK Sbjct: 221 KSGAAVMAADAGHSWTGGCLASERAAVAIEGAWILSALRDSAPNMNLGTVRMPK 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 29,675,764 Number of extensions: 1173390 Number of successful extensions: 3081 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 3068 Number of HSP's successfully gapped: 31 Length of query: 414 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 305 Effective length of database: 25,807,025 Effective search space: 7871142625 Effective search space used: 7871142625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)