BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0016.p (270 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all0261 [G] COG0395 ABC-type sugar transport system, permease co... 193 2e-49 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 168 9e-42 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 164 2e-40 SMb20233 [G] COG0395 ABC-type sugar transport system, permease c... 159 4e-39 CAC0428 [G] COG0395 ABC-type sugar transport system, permease co... 156 3e-38 >all0261 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/264 (37%), Positives = 158/264 (59%), Gaps = 4/264 (1%) Query: 11 YALLSLCSIFFILPFGYAIYTSLLGKSDIGHWVG---VARLTLENYKDVFVNSDMTV-WY 66 Y LL+ ++ ++PF +A+ S S+I TL+NY+ +F+ + + W Sbjct: 13 YVLLTTYAVITLVPFLWALSASFKPLSEIVSGTPNFLPQNFTLDNYRQIFLQEPLFLRWL 72 Query: 67 VNSIVVTLGILLGNLAINTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIV 126 NS+V+ + + L NL N+MA Y+L+RL++ G+ P Q+T+IP + ++ Sbjct: 73 FNSVVIAVSVTLLNLLFNSMAGYALARLSFVGKNFWFFLILAVLAVPAQITLIPTFLILK 132 Query: 127 KLGWLNSYQGLIIPFMFQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSK 186 +GWLNSYQG+I+P M +F+MRQF ++ P+ELEEAA++DGL IGIF IILPL+K Sbjct: 133 AIGWLNSYQGMIVPSMVNATFIFMMRQFFINFPQELEEAAQLDGLNTIGIFRYIILPLAK 192 Query: 187 GAIGTQIIFSFTGTWNSFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTL 246 A+ Q +F F G+WN+F+ PV ++ + + L +GLNT K +Y + N M ++ TL Sbjct: 193 PALAAQAVFVFMGSWNNFLLPVVILFEPEMFTLPLGLNTFKGQYISYWNYIMAASMVFTL 252 Query: 247 PIIVVFLIFQRHLVQGIATTGLKG 270 P + ++ F R+ +Q TG KG Sbjct: 253 PALSIYAFFNRYFIQSATFTGGKG 276 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 152/272 (55%), Gaps = 7/272 (2%) Query: 3 NLGKTSIRYALLSLCSIFFILPFGYAIYTSLLGKSDIGHWVGVARL-----TLENYKDVF 57 L K + Y ++ L I ++PF + I T+ K+ + V + T N+ VF Sbjct: 12 QLIKNILTYTIICLGGIIMLMPFVWMISTAF--KTGAANMVLPPQFIPKEPTTANFTQVF 69 Query: 58 VNSDMTVWYVNSIVVTLGILLGNLAINTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVT 117 M + +NS+VV + LG + +MAAY+ +R+ + GR P QVT Sbjct: 70 EMFPMLRFLMNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVT 129 Query: 118 IIPIYSMIVKLGWLNSYQGLIIPFMFQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIF 177 +IP + ++ + GWL+SY GLI+P +F F FL+RQ M IPKELEEAA +DG IF Sbjct: 130 MIPQFILMKQFGWLDSYAGLIVPALFSVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIF 189 Query: 178 FRIILPLSKGAIGTQIIFSFTGTWNSFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLT 237 ++ILPL+K T I +F +WNS++WP+ + + L +GL+ L+ RY L Sbjct: 190 RKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLM 249 Query: 238 MTGVVLLTLPIIVVFLIFQRHLVQGIATTGLK 269 M GV++ +PI+ V+L Q++ +QG+A +G+K Sbjct: 250 MAGVLISVIPILAVYLFAQKYFIQGMAMSGMK 281 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 148/260 (56%), Gaps = 4/260 (1%) Query: 13 LLSLCSIFFILPFGYAIYTSLLGKSDI---GHWVGVARLTLENYKDVFVNSDMTVWYVNS 69 +L++ F ILPF + + +SL ++I + TL+N+ +F D ++ N+ Sbjct: 18 ILTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNT 77 Query: 70 IVVTLGILLGNLAINTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIVKLG 129 +++ G L +N MA Y ++ + G+ P QVT+IP+Y ++ G Sbjct: 78 LIIVFFSFFG-LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAG 136 Query: 130 WLNSYQGLIIPFMFQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSKGAI 189 N+ G+++P + F +FL RQFM +I +L EAA +DG ++ IF+RI++P+S+ + Sbjct: 137 LTNTMTGIVLPGLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVL 196 Query: 190 GTQIIFSFTGTWNSFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTLPII 249 Q I +F WNSF+WP+ + ND ++Y L+VGL LK +Y L M G + +PII Sbjct: 197 AVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPII 256 Query: 250 VVFLIFQRHLVQGIATTGLK 269 ++F+ FQ+++++G +G+K Sbjct: 257 LIFMTFQKYILKGFNVSGMK 276 >SMb20233 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 132/221 (59%) Query: 49 TLENYKDVFVNSDMTVWYVNSIVVTLGILLGNLAINTMAAYSLSRLNYPGRGLXXXXXXX 108 TL+N+ V + VNS +V+ + + L +TMA Y+L+RL +PGR + Sbjct: 62 TLDNFIYVLTGVPFIRYMVNSFLVSATVTVVALFFHTMAGYALARLRFPGREVMFLSIFS 121 Query: 109 XXXXPYQVTIIPIYSMIVKLGWLNSYQGLIIPFMFQGFLVFLMRQFMMSIPKELEEAAEV 168 V I+P++ ++ +G LNSY GLIIP +F F +FL+RQ+ +S+PKE+EEAA + Sbjct: 122 TFLVSLPVIIVPLFVIVKAMGMLNSYAGLIIPAIFNAFGIFLLRQYYLSLPKEIEEAARI 181 Query: 169 DGLTKIGIFFRIILPLSKGAIGTQIIFSFTGTWNSFVWPVTLVNDSRWYVLTVGLNTLKN 228 DG I++ +ILPLS+ + I F WNSF+WP+T+ +D +V+ +G+ K+ Sbjct: 182 DGAGYWRIYWSVILPLSRPIMSALAILFFLANWNSFLWPLTITSDPDLWVVQLGIANFKS 241 Query: 229 RYFEWPNLTMTGVVLLTLPIIVVFLIFQRHLVQGIATTGLK 269 +Y N M ++ +P +++F+IFQR ++ + T+GLK Sbjct: 242 QYSASWNYMMAASTIVAIPTLILFVIFQRQIMDSLKTSGLK 282 >CAC0428 [G] COG0395 ABC-type sugar transport system, permease component Length = 273 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 148/252 (58%), Gaps = 3/252 (1%) Query: 22 ILPFGYAIYTSLLGKSDIGHWVG---VARLTLENYKDVFVNSDMTVWYVNSIVVTLGILL 78 I+P YA+ SL+ + I + + L NYK+V + + + VNS +V+LG+ + Sbjct: 22 IVPLIYALCVSLMPQDQIFSFPPRFIPKGIYLGNYKEVLRSVPIIKFIVNSFIVSLGVTV 81 Query: 79 GNLAINTMAAYSLSRLNYPGRGLXXXXXXXXXXXPYQVTIIPIYSMIVKLGWLNSYQGLI 138 + ++MAA++ S L++ G+ + P + T+I Y + LGWL+SY+ LI Sbjct: 82 FQIITSSMAAFAFSFLDFKGKKILFIAVLATLMIPAETTLISNYLTVGSLGWLDSYKALI 141 Query: 139 IPFMFQGFLVFLMRQFMMSIPKELEEAAEVDGLTKIGIFFRIILPLSKGAIGTQIIFSFT 198 +P+M +F+MRQ+ ++IPKEL EAA++DG G F +I++P+S+ I + I+SF Sbjct: 142 VPYMCSAMGIFMMRQYYLTIPKELYEAAKIDGCGSFGFFTKILMPVSRPVIASFGIYSFL 201 Query: 199 GTWNSFVWPVTLVNDSRWYVLTVGLNTLKNRYFEWPNLTMTGVVLLTLPIIVVFLIFQRH 258 +WN ++WP+ + + + +G++ L+ + L M G+V++ LP IV+F+I Q+ Sbjct: 202 VSWNQYLWPLLVTSKESSRTVQIGISMLQFSENQSFGLIMAGIVIVLLPSIVIFIIGQKQ 261 Query: 259 LVQGIATTGLKG 270 LV G+ + +KG Sbjct: 262 LVDGMTSGAVKG 273 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.144 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,487,713 Number of extensions: 685480 Number of successful extensions: 2877 Number of sequences better than 1.0e-05: 153 Number of HSP's gapped: 2678 Number of HSP's successfully gapped: 153 Length of query: 270 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 165 Effective length of database: 26,268,361 Effective search space: 4334279565 Effective search space used: 4334279565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)