BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0015.p (319 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr2532 [G] COG1175 ABC-type sugar transport systems, permease c... 194 2e-49 AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport... 166 3e-41 AGpA786 [R] COG0431 Predicted flavoprotein 166 3e-41 AGpA780 [E] COG0559 Branched-chain amino acid ABC-type transport... 166 3e-41 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 162 8e-40 >alr2532 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 17/287 (5%), Positives = 43/287 (14%), Gaps = 3/287 (1%) Query: 27 RLASSSKFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEML 86 + + + ++ + Y L + D + Sbjct: 13 LRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGIT 72 Query: 87 KDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVT 146 K ++ + I+ T++ Sbjct: 73 KPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGV 132 Query: 147 TVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQ 206 + + VS +A + + F Sbjct: 133 RPEQAEA-FYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSI 191 Query: 207 NIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSL 266 I + + L+ + Sbjct: 192 AASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVRE--HKA 249 Query: 267 GSPAGATSTIVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXXQKR 313 G P G T V ++ + Sbjct: 250 GEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVP 296 >AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 17/262 (6%), Positives = 42/262 (16%), Gaps = 5/262 (1%) Query: 33 KFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEMLKDGDFW 92 K + + + ++ + DAA + Sbjct: 38 KMTRTIRWGVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAA-KAKEMTARFGIARSYGS 96 Query: 93 GALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVTTVFMYL 152 + + L + T Sbjct: 97 YEDLLADPEIDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAAS 156 Query: 153 FMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQNIPYDI 212 + + + + + I + V + Sbjct: 157 LPVAEAFMVRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFD 216 Query: 213 YESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSLGSPAGA 272 ++ A + L + T L L F + LA Sbjct: 217 VGCYAINTARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTC----STQL 272 Query: 273 TSTIVIYFYSQAFSFNRAGYGS 294 + T + + Sbjct: 273 SLTQKVTVLGTRGRLEIPIPFN 294 >AGpA786 [R] COG0431 Predicted flavoprotein Length = 323 Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 146/262 (55%), Gaps = 5/262 (1%) Query: 33 KFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEMLKDGDFW 92 K YLFVAP++IF+ ++ Y P+L S SF++ +FL+P+ F+G +NY ++L D W Sbjct: 38 KLTPYLFVAPLMIFIALFTYIPILASLNLSFREWNFLSPNMP-FVGFRNYEQLLASRDLW 96 Query: 93 GALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVTTVFMYL 152 +L + + V++VPL+ +AL+IA L + + R +LP +TSTV++ VF ++ Sbjct: 97 NSLWVTTLFAVLSVPLRLGLALVIAAYLVRESVHVRLLRGALFLPSVTSTVSIAVVFSWV 156 Query: 153 FMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQNIPYDI 212 F G+A FG+ V W + AL LI + W IG+ +V+Y+ GLQ IP ++ Sbjct: 157 FSTDYGMANALLGTFGLGKVQWLQNPHLALWVLIFVNTWKQIGYDIVIYIAGLQAIPREL 216 Query: 213 YESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSLGSPAGA 272 Y++ VDG R IT+P++ PTT+ +L +I A Q+F + + G PAGA Sbjct: 217 YDAAAVDGGKRLHVFRRITMPLVMPTTYFLLVISVIEAFQVFTIVNVMTKGG----PAGA 272 Query: 273 TSTIVIYFYSQAFSFNRAGYGS 294 T +V Y F G GS Sbjct: 273 TDMLVSLLYEIGFVLFDIGRGS 294 >AGpA780 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Length = 373 Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 17/262 (6%), Positives = 42/262 (16%), Gaps = 5/262 (1%) Query: 33 KFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEMLKDGDFW 92 K + + + ++ + DAA + Sbjct: 38 KMTRTIRWGVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAA-KAKEMTARFGIARSYGS 96 Query: 93 GALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVTTVFMYL 152 + + L + T Sbjct: 97 YEDLLADPEIDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAAS 156 Query: 153 FMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQNIPYDI 212 + + + + + I + V + Sbjct: 157 LPVAEAFMVRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFD 216 Query: 213 YESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSLGSPAGA 272 ++ A + L + T L L F + LA Sbjct: 217 VGCYAINTARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTC----STQL 272 Query: 273 TSTIVIYFYSQAFSFNRAGYGS 294 + T + + Sbjct: 273 SLTQKVTVLGTRGRLEIPIPFN 294 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 152/284 (53%), Gaps = 6/284 (2%) Query: 35 VGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEMLKDGDFWGA 94 + YLF+A ++ + I+ P+ + SF D +N + +IG NY +M +D F + Sbjct: 16 MAYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVN--SPNWIGFDNYIKMFRDPYFLIS 73 Query: 95 LKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVTTVFMYLFM 154 LKN+ I T + VPL V +L A+ +N + FRT FY+P + STVA T++ +L Sbjct: 74 LKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWYWLLN 133 Query: 155 QQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQNIPYDIYE 214 Q G+ + FG+ +W + +A+ +++++VW G ++++L GLQ IP ++YE Sbjct: 134 PQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLYE 193 Query: 215 SGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSLGSPAGATS 274 + ++GA+ W+ RY+T P L TTFLV T +I A Q+FDQ Y L + G P +T Sbjct: 194 ASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTK----GGPGNSTI 249 Query: 275 TIVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXXQKRFVKED 318 T+V Y Y++ F + GY S R KED Sbjct: 250 TLVYYIYNEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKED 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,841,599 Number of extensions: 864950 Number of successful extensions: 3033 Number of sequences better than 1.0e-05: 180 Number of HSP's gapped: 2764 Number of HSP's successfully gapped: 181 Length of query: 319 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 213 Effective length of database: 26,153,027 Effective search space: 5570594751 Effective search space used: 5570594751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)