BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0596.0014.p
         (223 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yyaS [S] COG2364 Predicted membrane protein                         64   2e-10
BH3078 [S] COG2364 Predicted membrane protein                          60   3e-09

>BS_yyaS [S] COG2364 Predicted membrane protein
          Length = 201

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 16/202 (7%)

Query: 21  VGNVFLGMGISIFKLSGMGNDPFSGMVMALAECIGMTYAXXXXXXXXXXXXXEFITGRRF 80
           +G + L +GIS+   SG+G  PF  +++ L++ IG+T                 I  R+ 
Sbjct: 8   IGILILSLGISLTIQSGLGTSPFDALLVGLSKKIGLTVGSWEVLISVILLICNAILTRK- 66

Query: 81  IGAGTFVNAILLGYIATFF----YNTWLNLLGEP---QLLWQRVIIVAIGVVVCSFGVSM 133
                    ILLG I  F      + WL ++        L  ++I   IG+V+   G ++
Sbjct: 67  -------KPILLGLITAFITGIGIDLWLFVVKNTIYLNSLLSKLICFGIGLVLIGLGTAI 119

Query: 134 YQTSDVGVAPYDSLSLIMRDNFPRISYFWHRMFTDALCALICFLAGGIIGLGTLVSVFGL 193
           Y  +     P D L+LI+RD   R +  + R    AL  ++  +  G IG+GTL++V   
Sbjct: 120 YLQTKFASTPIDHLTLIIRDLSKR-TILFSRTLVYALFLVLAIIFKGPIGIGTLLTVCLG 178

Query: 194 GPIIHFFDVNFTKKLLAKGPKA 215
           G ++H F     +  L+K  + 
Sbjct: 179 GMLLHVFMPIVERHFLSKNRRG 200


>BH3078 [S] COG2364 Predicted membrane protein
          Length = 212

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 22/196 (11%)

Query: 15  RLIIMIVGNVFLGMGISIFKLSGMGNDPFSGMVMALAECIGMTYAXXXXXXXXXXXXXEF 74
           + I  ++G +   +GIS    S +G  PF  +++ L++ +G+T               E 
Sbjct: 2   KFIFYVIGILTFTLGISFTIQSDLGTSPFDALLVGLSQTVGLTVGSW-----------EI 50

Query: 75  ITGRRFIGAGTFVN-------AILLGYIATFFYNTWLNLLGE---PQLLWQRVIIVAIGV 124
           +     IG  + +         +L   I     + WL L      P+L + + I  AIG+
Sbjct: 51  LIAFMLIGCNSLLKRQKPEILGVLTALIVGIGIDMWLFLSHHFITPELWYSKSICFAIGL 110

Query: 125 VVCSFGVSMYQTSDVGVAPYDSLSLIMRDNFPRISYFWHRMFTDALCALICFLAGGIIGL 184
           VV + G ++Y  +++   P D L+LI+++   R + F+ R     +  L+  L  G IG+
Sbjct: 111 VVVAAGTAIYLHTNIAPIPVDRLTLIIQE-ITRTNLFFSRTLVYLVFLLMALLFNGPIGV 169

Query: 185 GTLVSVFGLGPIIHFF 200
           GT+V+V   G +++FF
Sbjct: 170 GTVVTVCLGGLLLNFF 185


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.330    0.145    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,591,383
Number of extensions: 571780
Number of successful extensions: 1465
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1455
Number of HSP's successfully gapped: 4
Length of query: 223
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 121
Effective length of database: 26,614,363
Effective search space: 3220337923
Effective search space used: 3220337923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 114 (48.5 bits)