BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0008.p (551 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 351 2e-96 BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 80 1e-14 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 74 5e-13 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 72 2e-12 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 203/511 (39%), Positives = 290/511 (56%), Gaps = 27/511 (5%) Query: 51 IQFPLKEKTTLKVVARRAPLAPSDYNEMTMAKKLEEMSNVHIDWNTIVETDYNEKKNLLI 110 + FPL+EK TLK + +PL+P D NE + ++LE+ + VHIDW T ++D+ EK+NL I Sbjct: 39 VTFPLQEKKTLKFMTASSPLSPKDPNEKLILQRLEKETGVHIDW-TNYQSDFAEKRNLDI 97 Query: 111 ASGDLPEMFFGAGFTDTELMKYGKDGTIIPLNDLIDKHMPNLKALFDKRPDIKAEVTAPD 170 +SGDLP+ G +D +LM + K G IIP+ DLIDK+MPNLK + D++P+ KA +TAPD Sbjct: 98 SSGDLPDAIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPD 157 Query: 171 GNIYSLPAGEELGTGQEEIGANPDFLYINEDWLKKLGLSMPTTLQEYHDVLVAFKTKDPN 230 G+IYS P EELG G+E I + D +IN+DWLKKLGL MP T + VL AFK DPN Sbjct: 158 GHIYSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPN 217 Query: 231 GNGKADEIPLSFVNAFWTGDIGYLFGAFGVPDKTYQPANNAYAEHLNV-DDGKVSYAAIQ 289 GNG+ADEIP SF++ D +LF AFG+ D +HL V +DGKV + A Sbjct: 218 GNGEADEIPFSFISGNGNEDFKFLFAAFGIGDND---------DHLVVGNDGKVDFTADN 268 Query: 290 DGYKDAVREIAKWVGEGLVDQESFTQEYTQYYAKGKTEQETLGSFLWWDHTDVVGPERDK 349 D YK+ V+ I + +GL+D+E+F ++ Y AKG ++ G + WD +V G ++ Sbjct: 269 DNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQK--FGVYFTWDKNNVTG--SNE 324 Query: 350 HYPIVP----PFKDMVVKWNNGSALSRGGSVITKEAKNPALVAAWLDLIYKPETTAEVRW 405 Y ++P P V NG +R VIT KN L A W+D Y P + + W Sbjct: 325 SYDVLPVLAGPSGQKHVARTNGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNW 384 Query: 406 GPIGE-----WFEKSADGKLVQKSDISN--PGEFRQKVSLGGGGVFTGEDFEKIAPPEAR 458 G G+ FE ++ ++ P E RQK +GG + K+ Sbjct: 385 GTYGDDKQQNIFELDQASNSLKHLPLNGTAPAELRQKTEVGGPLAILDSYYGKVTTMPDD 444 Query: 459 AQQRLDDIKNIFVPQMQK-EKYPNIFFTEEELKTIDKLKPEIQTYTNSMRAKFMLKGVSD 517 A+ RLD IK +VP M YP +F T+E+L I ++ ++ Y RA++++ G D Sbjct: 445 AKWRLDLIKEYYVPYMSNVNNYPRVFMTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNID 504 Query: 518 SEWSDYLASLKNMGLDDLMKVYQDGYDRYLA 548 +EW DY L+ GL D + + Q YD+Y A Sbjct: 505 TEWDDYKKELEKYGLSDYLAIKQKYYDQYQA 535 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 33/227 (14%) Query: 93 DWNTIVETDYNEKKNLLIASGD-LPEMFFGAGFTDTEL-MKYGKDGTIIPLNDLIDKHM- 149 +W + +N + L+++SG+ LP++F DT + G ++P+++ I+ + Sbjct: 81 EWTQPNDEQFNTQLRLMMSSGEKLPDVF---QVNDTAIKADLLSSGLVMPVDEAIETYAS 137 Query: 150 PNLKALFDKRPDIKAEVTAPDGNIYSLPAGEELGTGQEEIGANPDFLYINEDWLKKLGLS 209 P LK LF++ P T DG Y +P G G + + L+I +DWL K L Sbjct: 138 PRLKQLFEQFPQAFYPSTK-DGVRYGIPRFSG-GNGSDTL------LWIRQDWLDKFDLE 189 Query: 210 MPTTLQEYHDVLVAFKTKDPNGNGKADEIPLSFVN---AFWTGDIG---YLFGAFG--VP 261 PTTL+E ++ F +DPN GK D I ++F F G+I ++FGAFG VP Sbjct: 190 PPTTLEELEHIMDVFVNEDPNETGKNDTIGITFAAGDYGFRGGNIADSSWVFGAFGDFVP 249 Query: 262 DKTYQPANNAYAEHLNVDDGKVSYAAIQDGYKDAVREIAKWVGEGLV 308 A+++ DDG + Y +IQ KD + +I +W +G + Sbjct: 250 --------GAWSKG---DDGSLVYGSIQPSMKDGLAKIHEWYEKGYL 285 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 25/233 (10%) Query: 79 TMAKKLEEMSNVHIDWNTIVETDYNEKKNLLIASGDLPEMFFGAGFTDTELMKYGKDGTI 138 T+ K++EE++N ++D + + ++ N +ASG+LP++ F + ++ + G Sbjct: 69 TVIKEIEELTNTNLDLIWVPDAVKEDRVNAALASGNLPKVITLQDFRTSSVLNAFRSGQF 128 Query: 139 IPLNDLIDKHMPNLKALFDKRPDIKAEVTAPDGNIYSLPAGEELGTGQEEIGANPDFLYI 198 + +D+ PNL + + E + DG IY + L + I Sbjct: 129 WEIGPYLDE-FPNLSEM----NETILENVSVDGKIYGIYRERPLSRQG---------VVI 174 Query: 199 NEDWLKKLGLSMPTTLQEYHDVLVAFKTKDPNGNGKADEIPLSFVNAFWTGDIGYLFGAF 258 +DWL+ LGL MPT L+E ++V AF DPNG+G D + + N +FGAF Sbjct: 175 RQDWLENLGLEMPTNLEELYEVARAFTYDDPNGSGADDTVGFTDRNDL-------IFGAF 227 Query: 259 GVPDKTYQPANNAYAEHLNVDDGKVSYAAIQDGYKDAVREIAKWVGEGLVDQE 311 KT + E D+GK+ + D Y + + + EGL++ E Sbjct: 228 ----KTLASYHGTPNEWGFDDEGKLMPEFMTDEYVETMNYMKSLYDEGLINTE 276 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 59/286 (20%) Query: 37 KTENSGSQADDNASIQFPLKEKTTLKVVARRAPLAPSDYNEMTMAKKLEEMSNVHIDWNT 96 +T NS S + D I PL +P +PSD + K LE+ + I Sbjct: 26 ETSNSASGSKDTIKIMAPL-----------LSPESPSD--KSPSLKALEKYTGKEIKVTW 72 Query: 97 IVETDYNEKKNLLIASGDLPEMFF----GAGFTDTELMKYGKDGTIIPLNDLIDKHMPNL 152 + ++ YN+K N+++ASG++P AGF +K K G L+ + K NL Sbjct: 73 VPDSSYNDKFNIVMASGEMPHAIVIKDKSAGF-----IKSVKAGAFWELSPYL-KDYKNL 126 Query: 153 KALFDKRPDIKAEVTAPDGNIYSLPAGEELGTGQEEIGANPDFLYINEDWLKKLGLSMPT 212 +K + ++ +G +Y + +L I A + I DWLK +GL MP Sbjct: 127 SQADEKI----LKNSSVNGEVYGIYRTRDL------IRA---CMIIRTDWLKNVGLDMPE 173 Query: 213 TLQEYHDVLVAFKTKDPNGNGKADEIPLSFVNAFWTG-------DIGYLFGAFGVPDKTY 265 TL ++++VL AFK KDP+GNGK D V W G D+ ++ FG P++ Sbjct: 174 TLDDFYEVLKAFKEKDPDGNGKDD--TYGMVVPKWMGLGNGSPWDVLQIW--FGAPNR-- 227 Query: 266 QPANNAYAEHLNVDDGKVSYAAIQDGYKDAVREIAKWVGEGLVDQE 311 V++GK+ Y DA+ K EGL++++ Sbjct: 228 ----------YGVENGKLIPDFTTKEYMDALTFFKKLYDEGLINKD 263 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 43,602,953 Number of extensions: 1924393 Number of successful extensions: 4347 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 4336 Number of HSP's successfully gapped: 8 Length of query: 551 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 440 Effective length of database: 25,576,357 Effective search space: 11253597080 Effective search space used: 11253597080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)