BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0005.p (285 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 266 3e-71 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 245 6e-65 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 228 9e-60 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 225 5e-59 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 220 3e-57 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/275 (49%), Positives = 186/275 (67%), Gaps = 3/275 (1%) Query: 11 IFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGNTXXXXXXXXXX 70 IFKY PMYGV IAFKD+ KG+ GS+W+G F +F S NF ++ NT Sbjct: 33 IFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPNFGILLANTLKLSIYGLLL 92 Query: 71 XXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSPTSGLVNHIVTA 130 MLNQL +K+KK IQ +YAP FIS VV+VGM+F+F S G +N+ ++ Sbjct: 93 GFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGMIFLFFS-VGGPINNFLSM 151 Query: 131 FGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEAAVMDGASKWHR 190 FG + F+ +FRPLYIFS +WQ G+AS +Y A L +DP L EAA +DGA+ + R Sbjct: 152 FGMKA-DFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVDPALVEAARLDGANIFQR 210 Query: 191 IRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPTYVYKVGIQRAE 250 I HID+P + P +++ F++A G +MNVG+EKAFLMQT LN+ TSEII TYVYKVG+ + Sbjct: 211 IWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPTSEIISTYVYKVGLVSGD 270 Query: 251 YSFSAAIGLFNSVINLILLVIVNKTTKKI-SGKGL 284 YS+S A+GLFN+VIN++LLV VN+ K++ +G+G+ Sbjct: 271 YSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI 305 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 116/278 (41%), Positives = 179/278 (64%) Query: 8 YFTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGNTXXXXXXX 67 YF IFKY PM+GV IAFKD+ G W SEWVG ++F+ FF + +F +++ NT Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLD 100 Query: 68 XXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSPTSGLVNHI 127 +LN++R+ K+ IQT IY P+F+S ++V + F+F + +G++N + Sbjct: 101 LLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL 160 Query: 128 VTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEAAVMDGASK 187 + + GE I F+ + WFRP+ + S+W+ETG+ ++++LAALA +D +EAA+MDGA + Sbjct: 161 IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGR 220 Query: 188 WHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPTYVYKVGIQ 247 + R+ HI LP I TIIVL I+ +G+ +N+GFE+ +LM LN + ++I TYVY +GI Sbjct: 221 FRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGIT 280 Query: 248 RAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 + YS+S A+GLF SV+ +IL+ N KK +GLF Sbjct: 281 QGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 228 bits (581), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 113/286 (39%), Positives = 178/286 (62%), Gaps = 1/286 (0%) Query: 1 LILIPVAYFT-IFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGN 59 ++LIP IF+Y PM+G+ +AF+D+ G GSEWVGL+HF FE KQ++ N Sbjct: 32 VLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWN 91 Query: 60 TXXXXXXXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSP 119 T +LN++ Q +K+ +QT IY PYF+S V+L G+L LSP Sbjct: 92 TLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSP 151 Query: 120 TSGLVNHIVTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEA 179 G+VN + FG +PI F+G WFR + S +W+ETGF ++++LAA+ ++P+L+EA Sbjct: 152 DGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEA 211 Query: 180 AVMDGASKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPT 239 AV+DGA++W + HI LP + P IIV+ +++GN++N GF++ F + L T +II T Sbjct: 212 AVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDT 271 Query: 240 YVYKVGIQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 YVY+V + ++S+ A+GLF S+I+L+L++I + K + +F Sbjct: 272 YVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYANWRIF 317 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 115/285 (40%), Positives = 180/285 (63%) Query: 1 LILIPVAYFTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGNT 60 +IL + YF IFKY PM+G+ IAF+D+ GV GSEWVG +HF+R F F Q++ NT Sbjct: 41 MILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNT 100 Query: 61 XXXXXXXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSPT 120 +LN++R K+F+QT IY P+F+S V++V + ++ + Sbjct: 101 LVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTD 160 Query: 121 SGLVNHIVTAFGGEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEAA 180 G++N I+ + G+ + F+ E WFRPLYI +W+E G+A++IY AA+A IDP L+EAA Sbjct: 161 GGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAA 220 Query: 181 VMDGASKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPTY 240 MDGA+++ +I HI LP I I+VL I+ +G+++ +GFE FLM +N +EI TY Sbjct: 221 KMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTY 280 Query: 241 VYKVGIQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGLF 285 VY G++ ++S+S A+G F S++ LI++++ N KK +G++ Sbjct: 281 VYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/281 (39%), Positives = 171/281 (60%), Gaps = 2/281 (0%) Query: 6 VAYFTIFKYWPMYGVQIAFKDFVASKGVWGSEWVGLEHFQRFFESYNFKQIVGNTXXXXX 65 VA+ +F Y+P++G +AF++F + EWVGL+HF F+ F ++ NT Sbjct: 38 VAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSI 97 Query: 66 XXXXXXXXXXXXXXXMLNQLRQQKMKKFIQTTIYAPYFISTVVLVGMLFIFLSPTSGLVN 125 +LN++R K+ +QT Y P+F+S VV+ G++ LS G+VN Sbjct: 98 MGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVN 157 Query: 126 HIVTAFG--GEPIMFMGEEKWFRPLYIFSSVWQETGFASVIYLAALAGIDPHLHEAAVMD 183 ++ AFG +P+ FM + +WF + S +W+E G+ S+I+LAA+AGIDP L+EAA +D Sbjct: 158 QLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVD 217 Query: 184 GASKWHRIRHIDLPGIAPTIIVLFIMAVGNLMNVGFEKAFLMQTDLNVATSEIIPTYVYK 243 GAS+W +I HI LPGI PTI+V+ I+++G+LM +GFEK FL+ L V SE++ Y Sbjct: 218 GASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALN 277 Query: 244 VGIQRAEYSFSAAIGLFNSVINLILLVIVNKTTKKISGKGL 284 G+ YS+ AIG+FNSV+ +ILL + N K+ + + + Sbjct: 278 YGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,571,362 Number of extensions: 774374 Number of successful extensions: 2827 Number of sequences better than 1.0e-05: 123 Number of HSP's gapped: 2758 Number of HSP's successfully gapped: 123 Length of query: 285 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 180 Effective length of database: 26,268,361 Effective search space: 4728304980 Effective search space used: 4728304980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)