BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0004.p (638 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1462 [G] COG1621 Beta-fructosidases (levanase/invertase) 124 3e-28 lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-bin... 82 2e-15 lin2611_2 [R] COG3979 Uncharacterized protein contain chitin-bin... 60 1e-08 CAC0425 [G] COG1621 Beta-fructosidases (levanase/invertase) 53 2e-06 >CAC1462 [G] COG1621 Beta-fructosidases (levanase/invertase) Length = 346 Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 0/180 (0%), Positives = 0/180 (0%), Gaps = 16/180 (8%) Query: 461 DAAGNISAASNSVTATTQAAQEIGSLTNHDFESGNLSGWTVVSGNAFSDADVVADTNWGW 520 Sbjct: 372 ---- 427 Query: 521 GGPFNQSGAYHLWGFKD-----GGDSQIGVLKSAEFTLGGSGAIDFLVGGGNDINHLYVA 575 Sbjct: 428 ----- 482 Query: 576 LVRASDGTELMK--ATGSSNEAYSRITWNAASYVGTTCYIKIVDNATGGFGHINVDDVNV 633 Sbjct: 483 542 Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 0/166 (0%), Positives = 0/166 (0%), Gaps = 5/166 (3%) Query: 470 SNSVTATTQAAQEIGSLTNHDFESGNLSG-WTVVSGNAFSDADVVADTNWGWGGPFNQSG 528 Sbjct: 815 ---- 870 Query: 529 AYHLWGFKDGGDSQIGVLKSAEFTLGGSGAIDFLVGGGNDINHLYVALVRASDGTELMKA 588 Sbjct: 871 930 Query: 589 TGSSNEAYSRITWNAASYVGTTCYIKIVDNATGGFGHINVDDVNVP 634 Sbjct: 931 976 Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 0/122 (0%), Positives = 0/122 (0%), Gaps = 11/122 (9%) Query: 261 YNHAGNYHLLGELSGGNAATGVLKSNEFTLGGNGQVSFLIGGGSDIDKLYVSFVRASDGK 320 Sbjct: 866 925 Query: 321 ELYRSSGPGSYWNWPSIKGVTEGYTKRSWDATQYIGTPMYIKIVDERTDDWGHINVDDFI 380 Sbjct: 926 ----------- 974 Query: 381 VP 382 Sbjct: 975 976 Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 0/155 (0%), Positives = 0/155 (0%), Gaps = 12/155 (7%) Query: 228 FESGNLDGWIIESGTAFSNSGVTNAATFGNNQPYNHAGNYHLLGELSGGNAATGVLKSNE 287 Sbjct: 399 - 457 Query: 288 FTLGGNGQVSFLIGGGSDIDKLYVSFVRASDGKELYRSSGPGSYWNWPSIKGVTEGYTKR 347 Sbjct: 458 ---------- 507 Query: 348 -SWDATQYIGTPMYIKIVDERTDDWGHINVDDFIV 381 Sbjct: 508 542 >lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3 Length = 141 Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/74 (60%), Positives = 52/74 (70%) Query: 404 ITPSSVTLGWTASTDNVGVTCYLIYRGGVQVAXXXXXXXXDSGLTAETAYTYTVKAKDAA 463 +T SVTL WTASTDN V Y +YR G +V DSGLTA+TAYTYTVKA DAA Sbjct: 14 VTDKSVTLSWTASTDNKAVAGYKVYRNGTEVGSVSGTTFTDSGLTAKTAYTYTVKAYDAA 73 Query: 464 GNISAASNSVTATT 477 GN SAAS+++T TT Sbjct: 74 GNFSAASSALTVTT 87 >lin2611_2 [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3 Length = 184 Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%) Query: 405 TPSSVTLGWTASTDNVGVTCYLIYRGGVQVAXXXXXXXXDSGLTAETAYTYTVKAKDAAG 464 T +++ L W ASTDNV V Y +YR ++A D+ L ++T+Y+Y V A D +G Sbjct: 17 TDTTIALCWQASTDNVEVKNYELYRNNTKIATTTSTMFEDTKLASDTSYSYKVYAVDTSG 76 Query: 465 NISAASNSVTATTQAAQEIGS 485 N S SN +TA T+ + + Sbjct: 77 NRSLVSNEITAKTKPLDPMNT 97 >CAC0425 [G] COG1621 Beta-fructosidases (levanase/invertase) Length = 346 Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 0/111 (0%), Positives = 0/111 (0%), Gaps = 2/111 (1%) Query: 1 VQSDTVEIEMEVSRGSADSVGIKIRKSPNSEEETLIYYKNSTKEYGVDRTKTIAGQNKGI 60 Sbjct: 366 425 Query: 61 QKGTIDIGSENVKLHVYLDKSMAESYLN-GLKSITTRTYSSRTDAKGLQLW 110 Sbjct: 426 - 475 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.311 0.129 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 44,230,946 Number of extensions: 1901093 Number of successful extensions: 3829 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 3829 Number of HSP's successfully gapped: 8 Length of query: 638 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 525 Effective length of database: 25,345,689 Effective search space: 13306486725 Effective search space used: 13306486725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 119 (50.4 bits)