BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0591.0021.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing prot... 82 1e-15 AGc1998 [K] COG2207 AraC-type DNA-binding domain-containing prot... 76 6e-14 araC [K] COG2207 AraC-type DNA-binding domain-containing proteins 75 1e-13 ECs0068 [K] COG2207 AraC-type DNA-binding domain-containing prot... 75 1e-13 BS_ybfI [K] COG2207 AraC-type DNA-binding domain-containing prot... 75 1e-13 >SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 333 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 61/100 (61%) Query: 182 IRRAADYIEHNFAQMISIEQLSEHVSLSKYHLIRRFSASTGLTPGAYLTRIRIEKAMELL 241 +RRA ++E + A+ ++ QL+E V +S++H R F +TGL+P Y R R+ +A LL Sbjct: 234 LRRAVAHLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLSPSRYFIRQRVARAQLLL 293 Query: 242 RGSSLSIEAISKQIGYSSGSYFIKAFRSLTGLTPGEFRSG 281 + + SI I +GYSS S+F + FR TGL P +R G Sbjct: 294 QETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYRRG 333 >AGc1998 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 816 Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 6/101 (5%), Positives = 18/101 (17%), Gaps = 1/101 (0%) Query: 181 SIRRAADYIEHNFAQMISIEQLSEHVSLSKYHLIRRFSASTGLTPGAYLTRIRIEKAMEL 240 + + S ++ + + L +E + Sbjct: 186 LASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLEAFVRY 245 Query: 241 LRGSSLSIEAISKQIGYSSGSYFIKAFRSLTGLTPGEFRSG 281 L + + +S + E Sbjct: 246 LDRAKKPLV-DKPIAIHSEKDGITVEVALWWNDSYHENVLC 285 >araC [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 22/246 (8%) Query: 50 LFQYTLSGEGVFESENRTYLVTAGQAFLAEIPGRHRYFYPPDSKEPWQFLFLLFRPDLIL 109 + T+ G+GV +++ R ++ G L H Y P+++E W ++ FRP Sbjct: 46 ILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEARE-WYHQWVYFRPRAYW 104 Query: 110 PHWRK----------FLREAGEVPHLSADCAPVRLLRMIVNDAAA-GRISDPLIASSSIY 158 W F + PH S L I+N GR S+ L+A + + Sbjct: 105 HEWLNWPSIFANTGFFRPDEAHQPHFSD------LFGQIINAGQGEGRYSE-LLAINLLE 157 Query: 159 QFMTELSRLQVTTLRNKDNWSESIRRAADYIEHNFAQ-MISIEQLSEHVSLSKYHLIRRF 217 Q + L R++ +R A YI + A I +++HV LS L F Sbjct: 158 QLL--LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLF 215 Query: 218 SASTGLTPGAYLTRIRIEKAMELLRGSSLSIEAISKQIGYSSGSYFIKAFRSLTGLTPGE 277 G++ ++ RI +A LL + + I + + +G+ YF + F+ TG +P E Sbjct: 216 RQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSE 275 Query: 278 FRSGGD 283 FR+G + Sbjct: 276 FRAGCE 281 >ECs0068 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 22/246 (8%) Query: 50 LFQYTLSGEGVFESENRTYLVTAGQAFLAEIPGRHRYFYPPDSKEPWQFLFLLFRPDLIL 109 + T+ G+GV +++ R ++ G L H Y P+++E W ++ FRP Sbjct: 46 ILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEARE-WYHQWVYFRPRAYW 104 Query: 110 PHWRK----------FLREAGEVPHLSADCAPVRLLRMIVNDAAA-GRISDPLIASSSIY 158 W F + PH S L I+N GR S+ L+A + + Sbjct: 105 HEWLNWPSIFANTGFFRPDEAHQPHFSD------LFGQIINAGQGEGRYSE-LLAINLLE 157 Query: 159 QFMTELSRLQVTTLRNKDNWSESIRRAADYIEHNFAQ-MISIEQLSEHVSLSKYHLIRRF 217 Q + L R++ +R A YI + A I +++HV LS L F Sbjct: 158 QLL--LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLF 215 Query: 218 SASTGLTPGAYLTRIRIEKAMELLRGSSLSIEAISKQIGYSSGSYFIKAFRSLTGLTPGE 277 G++ ++ RI +A LL + + I + + +G+ YF + F+ TG +P E Sbjct: 216 RQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSE 275 Query: 278 FRSGGD 283 FR+G + Sbjct: 276 FRAGCE 281 >BS_ybfI [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 65 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 0/110 (0%), Positives = 0/110 (0%), Gaps = 1/110 (0%) Query: 169 VTTLRNKDNWSESIRRAADYIEHNFAQMISIEQLSEHVSLSKYHLIRRFSASTGLTPGAY 228 Sbjct: 157 216 Query: 229 LTRIRIEKAMELLRGSSLSIEAISKQIGYSSGSYFIKAFRSLTGLTPGEF 278 Sbjct: 217 - 265 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,003,256 Number of extensions: 835712 Number of successful extensions: 2632 Number of sequences better than 1.0e-05: 878 Number of HSP's gapped: 2612 Number of HSP's successfully gapped: 878 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 115 (48.9 bits)