BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0591.0015.p (295 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 144 2e-34 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 134 2e-31 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 126 4e-29 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 125 1e-28 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 124 2e-28 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 150/294 (51%), Gaps = 12/294 (4%) Query: 5 EKFTLFHFINYAVFALITLICVFPFYYLFINTISNNDLSSRGLVMFYPKGVHFTNYMDVF 64 + + +F NY L ++C+ P ++F ++S + ++ LVMF P Y Sbjct: 7 KGYKVFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTI 66 Query: 65 KIPGLGQAALMSVGRTVIGTLLTVAASAFLGYLFTKQ---MWGRKFWYRFLVITMYFNAG 121 ++ L+SV R V+GT++++ A Y +K+ GRKF+ F VITM FN G Sbjct: 67 ANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGG 126 Query: 122 LIPWYLTMLNLGLTNNFAAYVLPFIVQPF-FIILVKTFVESTPIALQESAQIDGAGYFKV 180 L+P Y+ + LGLTN A VLP + F I+L+ F + P +L+ESA IDGA +F++ Sbjct: 127 LVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQI 186 Query: 181 FTSXXXXXXXXXXXXXXXFSSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEATSIAQL 240 F F+ V WNS+ D + D + + LQ L + + Q Sbjct: 187 FLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFL-----QTIVVQQD 241 Query: 241 MKQSTGAMDLDLANMATPTSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVK 294 Q T A L N++ T ++ + LP+L+VYPF Q++FVKGI++GA K Sbjct: 242 FSQITDAETLR--NLSQRT-VQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 148/279 (53%), Gaps = 14/279 (5%) Query: 24 ICVFPFYYLFINTISNNDLSSRGLVMFYPKGVHFTNYMDVFKIPG-LGQAALMSVGRTVI 82 +C+FPF Y+ I ++++ + P F Y ++++ + +A +++ TV+ Sbjct: 49 LCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVFRAYGVTIFITVV 108 Query: 83 GTLLTVAASAFLGYLFT-KQMWGRKFWYRFLVITMYFNAGLIPWYLTMLN-LGLTNNFAA 140 GTL++V+ A Y + KQ RK + TM F+ G++P+Y+ M LGL N+ A Sbjct: 109 GTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLGLKNSVWA 168 Query: 141 YVLPFIVQPFFIILVKTFVE-STPIALQESAQIDGAGYFKVFTSXXXXXXXXXXXXXXXF 199 +LP V F+II+++TF + S P A+ ESA+IDGAG F++F F Sbjct: 169 LILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPGIATIALF 228 Query: 200 SSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEATSIAQ---LMKQSTGAMDLDLANMA 256 S++ WN + + L + D KL LQ +L R N I Q L Q++ +D + Sbjct: 229 STLAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAMLSSQNSALLD------S 282 Query: 257 TP-TSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVK 294 P S R + ++ LPI L YPFFQ++FVKG+ IG VK Sbjct: 283 IPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVK 321 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 6 KFTLFHFINYAVFALITLICVFPFYYLFINTISN-NDLSSRGLVMFYPKGVHFTNYMDVF 64 K LF + Y + LICV PF ++ + + ++ S+ ++ P Y +F Sbjct: 2 KNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILI-PTTFSLDAYRYIF 60 Query: 65 KIPGLGQAALMSVGRTVIGTLLTVAASAFLGY-LFTKQMWGRKFWYRFLVITMYFNAGLI 123 + ++ L+SV TVIGT +++ S+ + Y L + + GR+ +V TM F+ G+I Sbjct: 61 STDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMI 120 Query: 124 PWYLTMLNLGLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGAGYFKVFTS 183 P +L + +LGL +++ A +LP + F +I++K F ++ P +L+ESA+IDG +F Sbjct: 121 PTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFK 180 Query: 184 XXXXXXXXXXXXXXXFSSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEATSIAQLMKQ 243 F +VT WN++ + + D + +Q +L Q++ Sbjct: 181 IVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLL----------RQIVIV 230 Query: 244 STGAMDLDLANMATPT-----SIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVKG 295 S+G M D++ M + + +I+ V +V +P+LLVYPF Q+ F KG ++G+VKG Sbjct: 231 SSG-MQGDMSEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 12/290 (4%) Query: 9 LFHFINYAVFALITLICVFPFYYLFINTISNN-DLSSRGLVMFYPKGVHFTNYMDVFKIP 67 +F N + I + PF Y+ + + +L+ R +F PK Y VF P Sbjct: 15 VFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIF-PKTFTLDAYKYVFSTP 73 Query: 68 GLGQAALMSVGRTVIGTLLTVAASAFLGY-LFTKQMWGRKFWYRFLVITMYFNAGLIPWY 126 ++ +S+ TV+GT + + + + Y L + + GR ++ +M F+ G+IP Y Sbjct: 74 TFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTY 133 Query: 127 LTMLNLGLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGAGYFKVFTSXXX 186 L + +LGL + + A +LP + PF +I++K F + P L+ESA+IDG VF Sbjct: 134 LVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIAL 193 Query: 187 XXXXXXXXXXXXFSSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEATSIAQLMKQSTG 246 F +V WN F L + D + LQ +L + T ++ L + Sbjct: 194 PLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVL----RQVTILSDLTATNGD 249 Query: 247 AMDLDLANMATPT-SIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVKG 295 M N P I+ V ++ LPIL VYPF Q+ F KG++IG+VKG Sbjct: 250 TMQ----NAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 149/294 (50%), Gaps = 18/294 (6%) Query: 9 LFHFINYAVFALITLICVFPFYYLFINTISNNDLSSRGLVMFYPKGVHFTNYMDVFKIPG 68 +F+ NY L ++IC PF ++ + ++ + + + +P Y +F Sbjct: 11 VFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDI 70 Query: 69 LGQAALMSVGRTVIGTLLTVAASAFLGY-LFTKQMWGRKFWYRFLVITMYFNAGLIPWYL 127 + ++ ++S+ TV+GT ++ ++ + Y L K + GR+ +V TM F+ G+IP +L Sbjct: 71 IFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFL 130 Query: 128 TMLNLGLTNNFAAYVLPFIVQPFFIILVKTFVESTPIALQESAQIDGAGYFKVFTSXXXX 187 + +LGL + + A ++P + F +I++K F ++ P +L+ESA+IDG +F Sbjct: 131 VVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFP 190 Query: 188 XXXXXXXXXXXFSSVTQWNSFTDTLFLVTDQKLFTLQFILYRYMNEATSIAQLMKQSTGA 247 F +VT WN+F + + D ++ +Q +L Q++ S+G Sbjct: 191 LSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLL----------RQIVIMSSG- 239 Query: 248 MDLDLAN------MATPTSIRTTVSMVVVLPILLVYPFFQRFFVKGIMIGAVKG 295 M DL M +I+ V +V +P+L+VYPF Q+ F KG ++G+VKG Sbjct: 240 MQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,272,155 Number of extensions: 698618 Number of successful extensions: 2030 Number of sequences better than 1.0e-05: 106 Number of HSP's gapped: 1892 Number of HSP's successfully gapped: 106 Length of query: 295 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 189 Effective length of database: 26,153,027 Effective search space: 4942922103 Effective search space used: 4942922103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)