BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0591.0014.p (319 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 203 3e-52 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 186 5e-47 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 173 3e-43 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 165 9e-41 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 148 1e-35 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 103/271 (38%), Positives = 163/271 (60%), Gaps = 6/271 (2%) Query: 21 NNDKYRLFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSASEFMGLDWFTSMISNE 80 KY L+LM+LPF+ +F+Y PL+GW AF ++RPG+ E++GL F + Sbjct: 25 KQQKY-LYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELF--- 80 Query: 81 IQRQEVLRVLRNTFAISSLNIATS-VLPVIFAVFLVELRSTRFKKIVQTLTTLPNFISWV 139 Q VLRNT A+S + + +P++FAV L E+R FK+ VQT++ LP+F+SWV Sbjct: 81 -QDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWV 139 Query: 140 LVYSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMTLWSIWKGLGWGAIMY 199 +V + S+ ++ P+ +A W+ +TL +WK +GW +I++ Sbjct: 140 VVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIF 199 Query: 200 IAAITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLSIGNFINNGMEQFYVF 259 +AA+ GID ++YEAA+VDGA R+R +WH+T+PGI PT V+L+LSIG+ + G E+ ++ Sbjct: 200 LAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLL 259 Query: 260 QNAMNTNHIEVLDLYVYNIGMTNSNFGFATA 290 N + ++ EVLDLY N G+ + + TA Sbjct: 260 GNPLVVDYSEVLDLYALNYGLGLGRYSYGTA 290 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 102/298 (34%), Positives = 160/298 (53%), Gaps = 5/298 (1%) Query: 23 DKYRLFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSASEFMGLDWFTSMISNEIQ 82 ++ L LM+LPFL+ +F Y+PLYGW AF D+RP P+ ++ G FT + ++ Sbjct: 44 EQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDP-- 101 Query: 83 RQEVLRVLRNTFAISSLNIATSVLPVI-FAVFLVELRSTRFKKIVQTLTTLPNFISWVLV 141 VLRNT A+S +N+ + I A+ L ELR+ FK++VQT++ +P+F+SWV+ Sbjct: 102 --RFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVA 159 Query: 142 YSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMTLWSIWKGLGWGAIMYIA 201 S+ IS P+ L + W + +WK +GW I+Y+A Sbjct: 160 AGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLA 219 Query: 202 AITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLSIGNFINNGMEQFYVFQN 261 AIT ID E YEAA +DGA R + +W++T+PG+ P +LL++++G + +G E Y+ N Sbjct: 220 AITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMN 279 Query: 262 AMNTNHIEVLDLYVYNIGMTNSNFGFATAXXXXXXXXXXXXXXXANTMSKVIRGDSIF 319 MN + E LD++V G+ NF ATA AN ++K + +F Sbjct: 280 PMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARLF 337 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 155/281 (55%), Gaps = 7/281 (2%) Query: 40 LFSYLPLYGWIYAFYDYRPGIPLSASEFMGLDWFTSMISNEIQRQEVLRVLRNTFAISSL 99 +F YLP++G + AF DY P + SE++G D+F N + R+LRNT ++SL Sbjct: 44 IFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNP----DFFRLLRNTLMLASL 99 Query: 100 NIATSVLPVIFAVFLV-ELRSTRFKKIVQTLTTLPNFISWVLVYSFAFMLFSVXXXXXXX 158 ++ + + L+ E+R +K+ +QT +P+F+SW +V S F+ F+V Sbjct: 100 DLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINK 159 Query: 159 XXXXXXWISTPMNILASDNHTWMAMTLWSIWKGLGWGAIMYIAAITGIDQEIYEAARVDG 218 ++ L+ + + + SIWK GWG I+++AA+ +DQE YEAA +DG Sbjct: 160 LIMSLT--GEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDG 217 Query: 219 AGRFRLMWHVTVPGIMPTFFVLLLLSIGNFINNGMEQFYVFQNAMNTNHIEVLDLYVYNI 278 AGRFR MWH+T+P I T VLL+L IG+F+N G EQ Y+ N++N + ++ D YVY + Sbjct: 218 AGRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMM 277 Query: 279 GMTNSNFGFATAXXXXXXXXXXXXXXXANTMSKVIRGDSIF 319 G+T + ++TA AN ++K + +F Sbjct: 278 GITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 162/314 (51%), Gaps = 14/314 (4%) Query: 14 STPKHLRNNDKYR-------LFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSASE 66 S PK +R K + L+LM LP LV +F Y+P++G I AF DY+P + ++ SE Sbjct: 18 SIPKKVRRQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSE 77 Query: 67 FMGLDWFTSMISNEIQRQEVLRVLRNTFAISSLN-IATSVLPVIFAVFLVELRSTRFKKI 125 ++G F + + ++LRNT + N I +P+I AV L E+R FK+ Sbjct: 78 WVGFKHFERLFTEP----TFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRF 133 Query: 126 VQTLTTLPNFISWVLVYSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMTL 185 VQT+ +P+F+SWV+V S ++LF+ +N L S++ L Sbjct: 134 VQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSIT--GKNVNFLMSEDWFRPLYIL 191 Query: 186 WSIWKGLGWGAIMYIAAITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLSI 245 IW+ GW I+Y AAI ID +YEAA++DGA RFR +WH+T+P I VLL+L I Sbjct: 192 QVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKI 251 Query: 246 GNFINNGMEQFYVFQNAMNTNHIEVLDLYVYNIGMTNSNFGFATAXXXXXXXXXXXXXXX 305 G+ + G E ++ NAMN E+ D YVY G+ F ++TA Sbjct: 252 GDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVML 311 Query: 306 ANTMSKVIRGDSIF 319 AN ++K + ++ Sbjct: 312 ANWLAKKFGEEGVY 325 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 152/286 (53%), Gaps = 13/286 (4%) Query: 12 NASTPKHLRNNDKY------RLFLMALPFLVLAFLFSYLPLYGWIYAFYDYRPGIPLSAS 65 NA T + K+ +L ++ +P LVLA +F Y P++G + AF DY+P + + S Sbjct: 9 NAKTVERKLKKQKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGS 68 Query: 66 EFMGLDWFTSMISNEIQRQEVLRVLRNTFAISSLN-IATSVLPVIFAVFLVELRSTRFKK 124 E++GL F +M + +Q V+ NT IS L I ++P+I A+ L E+ K+ Sbjct: 69 EWVGLQHFITMFEYDYAKQ----VIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKR 124 Query: 125 IVQTLTTLPNFISWVLVYSFAFMLFSVXXXXXXXXXXXXXWISTPMNILASDNHTWMAMT 184 VQT+ LP F+SWV++ + S P+ L S++ + Sbjct: 125 TVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFG--IDPIFFLGSNDWFRTTVV 182 Query: 185 LWSIWKGLGWGAIMYIAAITGIDQEIYEAARVDGAGRFRLMWHVTVPGIMPTFFVLLLLS 244 + +WK G+ I+++AAIT ++ +YEAA VDGA R++ H+T+P ++P V+ LS Sbjct: 183 ISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLS 242 Query: 245 IGNFINNGMEQFYVFQNAMNTNHIEVLDLYVYNIGMTNSNFGFATA 290 +GN +N G +Q + N + +++D YVY + + N +F + TA Sbjct: 243 LGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTA 288 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,997,293 Number of extensions: 712870 Number of successful extensions: 2318 Number of sequences better than 1.0e-05: 109 Number of HSP's gapped: 2287 Number of HSP's successfully gapped: 109 Length of query: 319 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 213 Effective length of database: 26,153,027 Effective search space: 5570594751 Effective search space used: 5570594751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)