BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0591.0008.p
         (173 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins    55   8e-08
BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing prot...    54   1e-07

>BH0724 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 298

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 59  ELDIQIAITSIWRQVFLHQDSCSSSPHTATYITTQTRLRLMIEYIANHFMEKIRLEDIAF 118
           E+DI   +T IW+ +  +        +  + +    R++ M+++I  H+ E IRL+DIA 
Sbjct: 158 EMDITTKLTVIWKSLITNGFPLE---YDQSAMIKNQRMKAMLQWIHLHYGENIRLDDIAK 214

Query: 119 AAKVSKSEALRCFKEGAATSPVDYLIQFRLK 149
           A ++S+SE  R FK     +P+ Y+  +R++
Sbjct: 215 AGQLSRSECCRYFKRTLKMTPLQYVTDYRIQ 245


>BS_ydeC [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 291

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 59  ELDIQIAITSIWRQVFLHQDSCSSSPHTATYITTQTRLRLMIEYIANHFMEKIRLEDIAF 118
           E+DI + +T +W+ + ++        +  + +    R++ M+ +I  H++EKI LEDIA 
Sbjct: 156 EIDITMQLTLMWKNLVVNGFQLE---YDQSEMIKSHRMKQMLNWIHLHYVEKITLEDIAK 212

Query: 119 AAKVSKSEALRCFKEGAATSPVDYLIQFRLK 149
           A ++S+SE  R FK     +P+ Y++ +R++
Sbjct: 213 AGQLSRSECCRYFKRMLNKTPLRYVMDYRIQ 243


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,320,873
Number of extensions: 220861
Number of successful extensions: 488
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 2
Length of query: 173
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 74
Effective length of database: 26,960,365
Effective search space: 1995067010
Effective search space used: 1995067010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)