BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0032.p
         (111 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yfiC [V] COG1132 ABC-type multidrug transport system, ATPase ...    96   2e-20
BH0815 [V] COG1132 ABC-type multidrug transport system, ATPase a...    92   2e-19
lin0617 [V] COG1132 ABC-type multidrug transport system, ATPase ...    87   6e-18
TM0288 [V] COG1132 ABC-type multidrug transport system, ATPase a...    84   5e-17
Cgl0939 [V] COG1132 ABC-type multidrug transport system, ATPase ...    80   8e-16

>BS_yfiC [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 285

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 11/107 (10%), Positives = 17/107 (15%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
              T   +   L   N    Q                      +L+      +       
Sbjct: 147 QWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECITEEGFFC 206

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEFI 107
           V           +  L         T        L H+     S   
Sbjct: 207 VVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQA 253


>BH0815 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 611

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 66/99 (66%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           MSR TNDI+NI N+LN S+++I SS++ L G + +ML L+  +T+I +   PL+ +    
Sbjct: 148 MSRMTNDIENISNTLNSSVIKIFSSVLTLVGIMIVMLWLSPLMTVITMTVVPLMVFGLKW 207

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQE 99
           +  RT   FK QQ+ LG LNG+IEETVSG  V+  F +E
Sbjct: 208 ITRRTAVFFKQQQKALGDLNGYIEETVSGQSVIQAFSRE 246


>lin0617 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 605

 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           +SR+ ND+DNI N+L QSL Q I++I+ + G L MML ++  +TLI +VT P+     + 
Sbjct: 143 LSRSVNDMDNIANTLQQSLTQAITAIVQMIGVLIMMLTISWQMTLIVLVTVPISIILVAI 202

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106
           +A R+   F AQQ+ LG LN  +EET  G  ++  F QE++   +F
Sbjct: 203 IAGRSQRYFGAQQRNLGILNDTVEETYGGQTIIKAFGQEKKTLVKF 248


>TM0288 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 598

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 64/106 (60%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           +SR  ND+DNI N L  S++Q  S I+ LAG++ MM  +N  L+L+ +   PL       
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106
           V+S+T   F   Q+ LG+LNG IEE +SG  V+ LF +E++   +F
Sbjct: 197 VSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF 242


>Cgl0939 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 656

 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 65/106 (61%)

Query: 1   MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60
           +SR TND+DNI  SL Q+L Q I+S++ + G L MM +++  L L+A+V+ P+       
Sbjct: 182 LSRVTNDVDNIGQSLQQTLSQAITSLLTVIGVLVMMFIISPLLALVALVSIPVTIVVTVV 241

Query: 61  VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106
           VASR+   F  Q ++ G LN  +EET SGH VV +F  ++ +   F
Sbjct: 242 VASRSQKLFAEQWKQTGILNARVEETYSGHAVVKVFGHQKDVQEAF 287


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,377,186
Number of extensions: 206005
Number of successful extensions: 957
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 49
Length of query: 111
Length of database: 38,378,431
Length adjustment: 79
Effective length of query: 32
Effective length of database: 29,267,045
Effective search space: 936545440
Effective search space used: 936545440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 109 (46.6 bits)