BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0031.p
         (105 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0815 [V] COG1132 ABC-type multidrug transport system, ATPase a...   110   5e-25
SPy0230 [V] COG1132 ABC-type multidrug transport system, ATPase ...   107   4e-24
mll7116 [V] COG1132 ABC-type multidrug transport system, ATPase ...   103   7e-23
lin0617 [V] COG1132 ABC-type multidrug transport system, ATPase ...   103   7e-23
Rv1272c [V] COG1132 ABC-type multidrug transport system, ATPase ...   102   1e-22

>BH0815 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 611

 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 75/93 (80%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           M+++ ++LILDEATS++DT+ E+ IQ+A+ ++++GRTSFVIAHRL+TI+HAD ILV++ G
Sbjct: 516 MIANPSILILDEATSNIDTITELNIQEALHRLMNGRTSFVIAHRLNTIQHADVILVLEKG 575

Query: 61  RIAEQGNHEQLLQRKGLYYELQSSGSGFAEEAE 93
            + EQG+HE+L+ +KG+YY++   G     E E
Sbjct: 576 TLVEQGSHEELMAKKGVYYDMIDRGQQTLAEGE 608


>SPy0230 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 594

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 68/81 (83%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           +L+D  +LILDEATS+VDT+ E +IQ+A++ +++GRTSFVIAHRL TI +AD I+V++DG
Sbjct: 506 LLTDPEVLILDEATSNVDTVTESKIQRAMEAIVAGRTSFVIAHRLKTILNADHIIVLKDG 565

Query: 61  RIAEQGNHEQLLQRKGLYYEL 81
           ++ EQGNH +LL +KG Y EL
Sbjct: 566 KVIEQGNHHELLHQKGFYAEL 586


>mll7116 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 631

 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 65/81 (80%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           +++D  +L+LDEAT+S+D+  E+ IQKA+ +++ GRT  VIAHRL+TIR AD I+V+Q+G
Sbjct: 525 LVADAKILVLDEATASIDSYTEMLIQKALIKLLEGRTGLVIAHRLATIRGADRIIVLQNG 584

Query: 61  RIAEQGNHEQLLQRKGLYYEL 81
            I E GNHEQL+QRKGLY  L
Sbjct: 585 EIVESGNHEQLMQRKGLYARL 605


>lin0617 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 605

 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 64/84 (76%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
           +LSD ++LILDEATSSVDT  E+ IQ A+  ++ GRTSFVIAHRLSTIR AD ILV+  G
Sbjct: 514 ILSDPSILILDEATSSVDTRTELNIQLAMGNLMEGRTSFVIAHRLSTIRDADLILVMNHG 573

Query: 61  RIAEQGNHEQLLQRKGLYYELQSS 84
            + EQG H++LL  KG Y +L +S
Sbjct: 574 SVIEQGTHQELLDAKGFYADLYNS 597


>Rv1272c [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 631

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 65/81 (80%)

Query: 1   MLSDRALLILDEATSSVDTLAEIQIQKAVKQVISGRTSFVIAHRLSTIRHADTILVIQDG 60
            L+   LLILDEATSSVDT  E+ IQ+A++++   RTSF+IAHRLSTIR AD ILV+Q G
Sbjct: 548 FLARPQLLILDEATSSVDTRTELLIQRAMRELRRDRTSFIIAHRLSTIRDADHILVVQTG 607

Query: 61  RIAEQGNHEQLLQRKGLYYEL 81
           +I E+GNH +LL R+G+YY++
Sbjct: 608 QIVERGNHAELLARRGVYYQM 628


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.130    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,359,258
Number of extensions: 215503
Number of successful extensions: 1477
Number of sequences better than 1.0e-05: 232
Number of HSP's gapped: 1614
Number of HSP's successfully gapped: 238
Length of query: 105
Length of database: 38,378,431
Length adjustment: 73
Effective length of query: 32
Effective length of database: 29,959,049
Effective search space: 958689568
Effective search space used: 958689568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)