BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0024.p (334 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0604 [R] COG0714 MoxR-like ATPases 319 4e-87 PH0776 [R] COG0714 MoxR-like ATPases 318 1e-86 PAB0848 [R] COG0714 MoxR-like ATPases 315 5e-86 alr4849 [R] COG0714 MoxR-like ATPases 307 1e-83 DR0918 [R] COG0714 MoxR-like ATPases 301 7e-82 >BH0604 [R] COG0714 MoxR-like ATPases Length = 318 Score = 319 bits (818), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 150/285 (52%), Positives = 207/285 (72%) Query: 11 LQEAAALIQAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLARSL 70 + E I + EN+ +V+VGK + ++L L AL A+GHVLLEDVPG GKTML K +ARSL Sbjct: 1 MNETMQRIARVIENVERVVVGKRQEIELSLVALFASGHVLLEDVPGVGKTMLVKAIARSL 60 Query: 71 DCSFKRIQFTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSSLL 130 FKRIQFTPDLLPSD++G++ YNQKT +F+FRPGP+ ++++LADEINR +P+TQS+LL Sbjct: 61 GADFKRIQFTPDLLPSDVTGVSIYNQKTQQFEFRPGPIMANVVLADEINRTSPKTQSALL 120 Query: 131 ECMEERQITIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFEEG 190 E +EE +TI+G + L PF V+ATQNPV+ GT+PLPEAQLDRFL R+ GYP +E Sbjct: 121 EALEEGSVTIEGKSLVLSKPFFVMATQNPVEYAGTYPLPEAQLDRFLFRLQLGYPKPDEE 180 Query: 191 VHILQRFRENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAPSVKL 250 + +L+R + +P+ E S V ++ +LQ+ V V D++ YI+ IV TR+ V+L Sbjct: 181 LDVLKRLEKKHPIQELSPVMETEEVIQLQEEIKDVFVEDNVKAYIVEIVNLTRKHQKVEL 240 Query: 251 GASPRAGFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLL 295 G SPR A+++AAQ A+I+ RDYV+PDDIK +A L+HRL+L Sbjct: 241 GVSPRGSIAMMKAAQAYAMIQGRDYVIPDDIKTLAPFALSHRLIL 285 >PH0776 [R] COG0714 MoxR-like ATPases Length = 314 Score = 318 bits (814), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 149/281 (53%), Positives = 212/281 (75%), Gaps = 2/281 (0%) Query: 19 QAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLARSLDCSFKRIQ 78 Q + E + K IVGK + L+LA +LA+GH+L+ED+PG KT++AK+ A++L FKR+Q Sbjct: 8 QMVIEEVKKAIVGKDNVLKLVLATILADGHILIEDLPGLAKTLMAKSFAKALGLEFKRVQ 67 Query: 79 FTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSSLLECMEERQI 138 FTPDLLPSD+ G+N +NQKT EF+F+ GPVF++ILLADEINRA P+TQS+LLE M+ERQ+ Sbjct: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127 Query: 139 TIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFEEGVHIL-QRF 197 TI+GVT++L PF+VIATQNP++ +GT+PLPEAQLDRFL+R+ GYP+ +E IL +R Sbjct: 128 TIEGVTYKLPKPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRMGYPSKDEEKEILRRRI 187 Query: 198 RENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAP-SVKLGASPRA 256 +E V S +D+ ++Q+ V VSD ++ YI ++V ATR+ +++G SPR Sbjct: 188 ERKQDEVEIETVLSPKDVLKMQREVEDVYVSDAIIEYITSLVWATREDKRDIEIGVSPRG 247 Query: 257 GFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLLQR 297 ALL+ ++ A I RDYV+PDD+KAVA+P L+HR++L+R Sbjct: 248 SLALLKLSRAYAAIEGRDYVIPDDVKAVAIPALSHRIILKR 288 >PAB0848 [R] COG0714 MoxR-like ATPases Length = 314 Score = 315 bits (808), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 150/281 (53%), Positives = 212/281 (75%), Gaps = 2/281 (0%) Query: 19 QAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLARSLDCSFKRIQ 78 Q + E + K IVGK + L+LA++LA+GH+L+ED+PG KT++AK+ A++L F+R+Q Sbjct: 8 QKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRRVQ 67 Query: 79 FTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSSLLECMEERQI 138 FTPDLLPSD+ G+N +NQKT EF+F+ GPVF++ILLADEINRA P+TQS+LLE M+ERQ+ Sbjct: 68 FTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQERQV 127 Query: 139 TIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFEEGVHILQRFR 198 TI+G T++L PF+VIATQNP++ +GT+PLPEAQLDRFL+R+ GYP+ EE IL+R Sbjct: 128 TIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYPSKEEEKEILKRRI 187 Query: 199 ENN-PLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAP-SVKLGASPRA 256 E +E + V S DI +Q+ V VSD ++ YI ++V ATR+ +++G SPR Sbjct: 188 ERKMDDVEINTVLSPEDILRMQREIEEVYVSDAIIEYITSLVWATREDKREIEVGVSPRG 247 Query: 257 GFALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLLQR 297 ALL+ ++ A I RDYV+PDD+KAVA+P L+HR++L+R Sbjct: 248 SLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKR 288 >alr4849 [R] COG0714 MoxR-like ATPases Length = 359 Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 11/285 (3%), Positives = 47/285 (16%) Query: 18 IQAIRENLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLARSLDCSFKRI 77 I + + + + + L A + + + Sbjct: 5 TVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEAL 64 Query: 78 QFTPDLLPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSSLLECMEERQ 137 + + + + + +++ +++ + + + Sbjct: 65 RLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLD 124 Query: 138 ITIDGVTHELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFEEGVHILQRF 197 + + E + + R + Sbjct: 125 TGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEG 184 Query: 198 RENNPLLETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAPSVKLGASPRAG 257 + + S + + + + P + L +S A Sbjct: 185 KPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAV 244 Query: 258 FALLRAAQGCALIRQRDYVLPDDIKAVAMPVLAHRLLLQRGPGSR 302 + G Sbjct: 245 REHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVL 289 >DR0918 [R] COG0714 MoxR-like ATPases Length = 354 Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 150/272 (55%), Positives = 194/272 (71%) Query: 24 NLAKVIVGKAEGVDLLLAALLANGHVLLEDVPGTGKTMLAKTLARSLDCSFKRIQFTPDL 83 N+A+V+VGK + L LAA+LA GHVLLED PGTGKT+LA+ LA SL F+R+QFTPDL Sbjct: 27 NVARVLVGKEDVTRLALAAILAGGHVLLEDAPGTGKTVLARALAASLGLDFRRVQFTPDL 86 Query: 84 LPSDLSGINFYNQKTGEFQFRPGPVFSSILLADEINRATPRTQSSLLECMEERQITIDGV 143 LPSD++G++ + TG F+F PGP+F+ ILLADEINRATP+TQS+LLE M E Q++ GV Sbjct: 87 LPSDVTGVSVFRPATGTFEFVPGPIFTGILLADEINRATPKTQSALLEAMGEGQVSESGV 146 Query: 144 THELEAPFLVIATQNPVDSQGTFPLPEAQLDRFLMRITTGYPTFEEGVHILQRFRENNPL 203 TH L PF+VIATQNPV+ +GT+ LPEAQLDRFL+R++ GYP+ E+ V +L R +E +PL Sbjct: 147 THRLPQPFVVIATQNPVEHEGTYRLPEAQLDRFLLRLSVGYPSLEQEVEMLARLQERHPL 206 Query: 204 LETSAVASGRDIKELQQLAAAVTVSDDLLGYIIAIVEATRQAPSVKLGASPRAGFALLRA 263 + AVA+ D+ Q VTVS D+ Y+ A+ +RQ P V LG PRA AL Sbjct: 207 QDLRAVAAPADLLAAQAQVQQVTVSSDVRRYLAALAARSRQHPQVTLGGGPRASLALQGV 266 Query: 264 AQGCALIRQRDYVLPDDIKAVAMPVLAHRLLL 295 AQ A + R +V PDD++ A VLAHRL L Sbjct: 267 AQALAWTQGRTFVTPDDVQQAAPGVLAHRLSL 298 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,739,073 Number of extensions: 844780 Number of successful extensions: 3150 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 3111 Number of HSP's successfully gapped: 48 Length of query: 334 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 227 Effective length of database: 26,037,693 Effective search space: 5910556311 Effective search space used: 5910556311 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)