BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0020.p
         (135 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr1629 [K] COG0789 Predicted transcriptional regulators               71   4e-13
HI1623 [K] COG0789 Predicted transcriptional regulators                70   7e-13
alr7637 [K] COG0789 Predicted transcriptional regulators               69   2e-12
YPO0236 [K] COG0789 Predicted transcriptional regulators               68   3e-12
CC3082 [K] COG0789 Predicted transcriptional regulators                67   5e-12

>alr1629 [K] COG0789 Predicted transcriptional regulators
          Length = 359

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 5/94 (5%), Positives = 14/94 (14%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
             L    +   E     +   ++                  A    +   +         
Sbjct: 11  RALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGG 70

Query: 67  TKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAK 100
                   +G     D      +          +
Sbjct: 71  ITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQ 104


>HI1623 [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
           G LAK     +ET+RYYE+ GL+P P+RT+  +R Y EE L R+ FI N +N   +L EI
Sbjct: 4   GALAKALGCTVETIRYYEQQGLIPPPKRTSGNFRQYNEEHLQRLSFICNCRNLDISLSEI 63

Query: 67  TKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDLKRNLESAERHP 122
              L      K    +    +++ +  V   I +    R+ L++L+    S +  P
Sbjct: 64  KSLLNLENASKQQAEEINRVLDKHIKEVATRIHELAHLRMKLIELREKTVSNDEDP 119


>alr7637 [K] COG0789 Predicted transcriptional regulators
          Length = 359

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 7/118 (5%), Positives = 18/118 (15%)

Query: 5   LRGELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLR 64
            R  L    +   E     +   ++                  A    +   +       
Sbjct: 9   NRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRA 68

Query: 65  EITKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDLKRNLESAERHP 122
                     +G     D      +          +        +D    +       
Sbjct: 69  GGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTG 126


>YPO0236 [K] COG0789 Predicted transcriptional regulators
          Length = 141

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%)

Query: 7  GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
          G+LAK A V  +T+RYYEK G++   +RT  GYR+YT++ L R+ FI+ AK  GFTL  I
Sbjct: 5  GQLAKLADVTPDTIRYYEKQGMMDHGERTDGGYRLYTDQDLQRLRFIRYAKQLGFTLDTI 64

Query: 67 TKAL 70
           + L
Sbjct: 65 AELL 68


>CC3082 [K] COG0789 Predicted transcriptional regulators
          Length = 118

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
           GE+AK A V+   +R+YE+ G+LP   R A+GYR Y E  +A + FI+ A+  GF+L+EI
Sbjct: 4   GEIAKRAGVSTSRIRFYEEQGILPTAPRGANGYRDYPESLIATLGFIEQAQRLGFSLKEI 63

Query: 67  TKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDLKRNLE 116
                        +P  + A   K+  VD  IA  +  R  LV L   LE
Sbjct: 64  AGHAALEGRPCEGLPQKLRA---KLAEVDAHIAAAQARRAELVALIETLE 110


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,504,481
Number of extensions: 262558
Number of successful extensions: 1605
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 62
Length of query: 135
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 40
Effective length of database: 27,421,701
Effective search space: 1096868040
Effective search space used: 1096868040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)