BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0008.p (280 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing prot... 76 8e-14 STM0104 [K] COG2207 AraC-type DNA-binding domain-containing prot... 72 1e-12 araC [K] COG2207 AraC-type DNA-binding domain-containing proteins 72 1e-12 ECs0068 [K] COG2207 AraC-type DNA-binding domain-containing prot... 72 1e-12 CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 69 9e-12 >SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 333 Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 56/99 (56%) Query: 175 IRNAANIIHRECAGAWTLESMARLSGYSSYHFLRLFRLVMGKTPNRFLTDCRLARAKLLL 234 +R A + A + L +A G S +HF RLF+ G +P+R+ R+ARA+LLL Sbjct: 234 LRRAVAHLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLSPSRYFIRQRVARAQLLL 293 Query: 235 VSTGLTVAEIARQAGFAQSSYFIKVFREFEGMPPNQYRR 273 T ++ EI G++ S+F +VFR G+PP+ YRR Sbjct: 294 QETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYRR 332 >STM0104 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 281 Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 15/242 (6%) Query: 40 LNSYNLHLIFAGEGYVFHEGERIPMGRGKGFLFPRGAYQQYG--SDLSRPWDVRWVHFGA 97 + Y L+L GEG + + GE+ G LFP G YG D S W +WV+F Sbjct: 42 MKGYILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASE-WYHQWVYF-- 98 Query: 98 GLPLPLLEEVDQSRGYFFT---FDPEAGLESLFEEMYRLGVSY---ETRYEPRLSALLYE 151 P +E F F P+ + F E++ +S E RY L+ L E Sbjct: 99 -RPRAYWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLE 157 Query: 152 ILITLLQNSEPQHGAVSLEIRHSIRNAANIIHRECAGA-WTLESMARLSGYSSYHFLRLF 210 L LL+ + ++ + +R+A I A + + + S+A+ S LF Sbjct: 158 QL--LLRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLF 215 Query: 211 RLVMGKTPNRFLTDCRLARAKLLLVSTGLTVAEIARQAGFAQSSYFIKVFREFEGMPPNQ 270 R +G + + D R+++AKLLL +T + +A + R GF YF +VF++ G P++ Sbjct: 216 RQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSE 275 Query: 271 YR 272 +R Sbjct: 276 FR 277 >araC [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 13/241 (5%) Query: 40 LNSYNLHLIFAGEGYVFHEGERIPMGRGKGFLFPRGAYQQYGSD-LSRPWDVRWVHFGAG 98 + Y L+L G+G V ++G G LFP G YG +R W +WV+F Sbjct: 42 MKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYF--- 98 Query: 99 LPLPLLEEVDQSRGYFFT---FDPEAGLESLFEEMYRLGVSY---ETRYEPRLSALLYEI 152 P E F F P+ + F +++ ++ E RY L+ L E Sbjct: 99 RPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQ 158 Query: 153 LITLLQNSEPQHGAVSLEIRHSIRNAANIIHRECAGA-WTLESMARLSGYSSYHFLRLFR 211 L LL+ E + ++ + + +R A I A + + + S+A+ S LFR Sbjct: 159 L--LLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 216 Query: 212 LVMGKTPNRFLTDCRLARAKLLLVSTGLTVAEIARQAGFAQSSYFIKVFREFEGMPPNQY 271 +G + + D R+++AKLLL +T + +A + R GF YF +VF++ G P+++ Sbjct: 217 QQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF 276 Query: 272 R 272 R Sbjct: 277 R 277 >ECs0068 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 13/241 (5%) Query: 40 LNSYNLHLIFAGEGYVFHEGERIPMGRGKGFLFPRGAYQQYGSD-LSRPWDVRWVHFGAG 98 + Y L+L G+G V ++G G LFP G YG +R W +WV+F Sbjct: 42 MKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYF--- 98 Query: 99 LPLPLLEEVDQSRGYFFT---FDPEAGLESLFEEMYRLGVSY---ETRYEPRLSALLYEI 152 P E F F P+ + F +++ ++ E RY L+ L E Sbjct: 99 RPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQ 158 Query: 153 LITLLQNSEPQHGAVSLEIRHSIRNAANIIHRECAGA-WTLESMARLSGYSSYHFLRLFR 211 L LL+ E + ++ + + +R A I A + + + S+A+ S LFR Sbjct: 159 L--LLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 216 Query: 212 LVMGKTPNRFLTDCRLARAKLLLVSTGLTVAEIARQAGFAQSSYFIKVFREFEGMPPNQY 271 +G + + D R+++AKLLL +T + +A + R GF YF +VF++ G P+++ Sbjct: 217 QQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF 276 Query: 272 R 272 R Sbjct: 277 R 277 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Query: 141 YEPRLSALLYEILITLLQN-SEPQHGAVSLEIRHSIRNAANIIHRECAGAWT----LESM 195 YE + A +Y++++ LL+ + E R I N + R +T L + Sbjct: 148 YELAVKANIYQLIVYLLRGYVDKILNENEFEERKRILNKFQCVFRLIEEKYTEKLTLNEL 207 Query: 196 ARLSGYSSYHFLRLFRLVMGKTPNRFLTDCRLARAKLLLVSTGLTVAEIARQAGFAQSSY 255 A +S++HF R F+ + GKT ++ RL ++ L T L + EIA + GF ++Y Sbjct: 208 ADCVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLNITEIAIKCGFDNNNY 267 Query: 256 FIKVFREFEGMPPNQYRRVFG 276 F ++F++ M P +YR+++ Sbjct: 268 FSRLFKKHYDMTPTKYRKLYA 288 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,357,353 Number of extensions: 898347 Number of successful extensions: 2724 Number of sequences better than 1.0e-05: 92 Number of HSP's gapped: 2711 Number of HSP's successfully gapped: 92 Length of query: 280 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 175 Effective length of database: 26,268,361 Effective search space: 4596963175 Effective search space used: 4596963175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 115 (48.9 bits)