BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0587.0016.p
         (262 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1329 [H] COG2091 Phosphopantetheinyl transferase                   112   6e-25
RSc1804_3 [H] COG2091 Phosphopantetheinyl transferase                  70   4e-12
CAC2006 [H] COG2091 Phosphopantetheinyl transferase                    69   6e-12
RSp0163 [H] COG2091 Phosphopantetheinyl transferase                    52   6e-07

>CAC1329 [H] COG2091 Phosphopantetheinyl transferase
          Length = 201

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 109/190 (57%), Gaps = 15/190 (7%)

Query: 44  LLSCVSREKSEKLSRFHHQEDLIRGLIGDLLVRKIISETFAVPVKGIVFDTNSYGKPCLA 103
            L  V+ E+  K+ R+   ED +R L G L+++ ++S      +  I  + N +G+P L 
Sbjct: 20  FLKFVNEEEKNKIVRYIRYEDSLRSLYGKLILKNMLS------LDKIQLEYNEWGQPRLL 73

Query: 104 IPDNSSFHYNVSHSGDWVVCAIDDCPVGIDIEKIQPVQLEISRRFFAREEVEFIEKAPSD 163
             +NS  H+N+SHSG+WVV A+D+ P+GIDI++I  + L I+   F++ E ++I     D
Sbjct: 74  --NNSKVHFNISHSGEWVVVAVDEKPIGIDIQQIYKIDLTIAESSFSKRENKYIASLSKD 131

Query: 164 EQRQKRFFAVWTAKESYIKAIGQGLSHSLNNFSTVREGSVEGWRVFDHCN---WYLKAYN 220
           + R   FF +WT KE++IKA G+GL   LN+F T+   SV+   +   CN     L    
Sbjct: 132 D-RVDAFFMLWTLKEAFIKAKGKGLYIPLNSF-TIDISSVKP--ILYSCNNERCELSVER 187

Query: 221 LDDRYALAVC 230
           ++  Y +AVC
Sbjct: 188 VEKDYFMAVC 197


>RSc1804_3 [H] COG2091 Phosphopantetheinyl transferase
          Length = 266

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 46  SCVSREKSEKLSRFHHQEDLIRGLIGDLLVRKIISETFAVPVKGIVFDTNSYGKPCLAIP 105
           + +S ++  +L+RF    D  R L      R+++    A   + + F   + GKP L   
Sbjct: 67  AVLSDDEQRQLARFAFDADRERYLAAHWAKRRVLGALLAAAPRSLRFGAQAGGKPYLI-- 124

Query: 106 DNSSFHYNVSHSGDWVVCAI-DDCPVGIDIEKIQPVQLEISRRFFAREEVEFIEKAPSDE 164
              + H+++SHSGD V  A+    PVG+DIE+ + +    S    AR        AP  E
Sbjct: 125 -GEALHFSLSHSGDRVAVAVCRHAPVGVDIEQARGIACHAS---AARIMHPLDRIAPQCE 180

Query: 165 QRQKRFFAVWTAKESYIKAIGQGLSHSLNNFSTVREGSVE-GWRVFDHCNW 214
             + RF A W+ KE+  K  G GL+   ++      G+   G  +  H  W
Sbjct: 181 TPEDRFLAAWSLKEAVAKCTGAGLALPFDSLRLAFAGNGRYGCLLGTHAAW 231


>CAC2006 [H] COG2091 Phosphopantetheinyl transferase
          Length = 232

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 74  LVRKIISETFAVPVKGIVFDTNSYGKPCLAIPDNSSFHYNVSHSGDWVVCAIDDC-PVGI 132
           + R +ISE   +    I +  N Y KP +   +N   ++N+SHS +++V  I     +G+
Sbjct: 69  ITRILISEYLEINYWEICYYYNEYNKPYVYCNNNQKIYFNISHSKEYLVIGISKAHEIGV 128

Query: 133 DIEKIQPVQLEISRRFFAREEVEFIEKAPSDEQRQKRFFAVWTAKESYIKAIGQGLSHSL 192
           D+EKI      + +  F  +E++   K     + Q   + +W  KE+  KA+G G++  L
Sbjct: 129 DVEKIVLKPRTLPKEIFTYQELQLFNKYDEIYKNQAA-YKMWVQKEAICKALGVGITIEL 187

Query: 193 NNFSTVREGSVEGWRVFD------HCNWYLKAYNLDDRYALAV 229
           N FS VR     G++ +        C+  +K Y L + YA A+
Sbjct: 188 NQFS-VRVNPCLGYQEYYIYVDSFKCHIKVKVY-LKNEYAFAI 228


>RSp0163 [H] COG2091 Phosphopantetheinyl transferase
          Length = 272

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 13/172 (7%)

Query: 27  QIYAVAISHFPNTQLLPLLSCVSREKSEKLSRFHHQEDLIRGLIGDLLVRKIISETFAVP 86
           Q YA A+  F        L+ +   + ++   FH + D +  ++    +R++++    + 
Sbjct: 32  QEYADAVPRF--------LAQLPASEQQRAEAFHFERDRVSYVVSHYALRQVLAGHLGLD 83

Query: 87  VKGIVFDTNSYGKPCLAIP-DNSSFHYNVSHSGDWVVCAIDDC-PVGIDIEKI-QPVQLE 143
             G  F+    GKP L      S   +++SH+    + A+     VG+D+E++   V + 
Sbjct: 84  GFGHAFEVGPRGKPSLPRAFAASGLEFSLSHTHGLALIAVSRLGAVGVDVERVVDTVDVH 143

Query: 144 -ISRRFFAREEVEFIEKAPSDEQRQKRFFAVWTAKESYIKAIGQGLSHSLNN 194
            ++   FA  E   +    +   R   FF +W  KE+Y+KA+G GL+  L  
Sbjct: 144 GLAASVFAEPECRRLAGLDAVAARHG-FFRLWVRKEAYVKALGIGLADGLRE 194


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,559,907
Number of extensions: 775850
Number of successful extensions: 1109
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1109
Number of HSP's successfully gapped: 4
Length of query: 262
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 158
Effective length of database: 26,383,695
Effective search space: 4168623810
Effective search space used: 4168623810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)