BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0587.0011.p
         (1180 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3865_1 [E] COG2866 Predicted carboxypeptidase                       305   2e-82

>BH3865_1 [E] COG2866 Predicted carboxypeptidase
          Length = 381

 Score =  305 bits (782), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 151/342 (44%), Positives = 209/342 (61%), Gaps = 13/342 (3%)

Query: 56  SMTEARTLPITLALPEGVTANQLTWNFGRTAEEMKPLAQWKKWNNASSVRAYTGDPFIKV 115
           S+TE R + ++ ++P+ +  +   W FG      KPL  WK W+  S  R ++GD FI  
Sbjct: 49  SLTEEREVKVSFSIPDHLELDDFVWAFGG-----KPLEDWKSWDGES--RDFSGDSFITF 101

Query: 116 SYEPA---SPSTVTALVYFDMPFG-GNLSISGIRAEYVKLAGTYNLTATAPDGHVLVQQQ 171
           + EP      + V A ++F +PFG  +LS   IR  Y +L G Y+L  T P     + Q 
Sbjct: 102 TKEPTIDRKTNDVHATLHFSLPFGTDDLSPRTIRVRYPELMGEYDLAVTHPSSGFSLSQS 161

Query: 172 VKLNPYDTYHTYDEIKPAIDRITADSNNKYGRYVEYQQIGTSTQGRAIHFSIVAKDKASV 231
           + L  YD + TY+EIKPAID +  D+     RY+EYQ +G S +GR +HF ++AKD+ +V
Sbjct: 162 MSLKVYDEFLTYEEIKPAIDEVLQDAPED--RYLEYQSLGKSVEGRDLHFVVLAKDEEAV 219

Query: 232 DQYLNETLPLMNNDPAALQEMIKNGQLQNYKVPIWLNNIHADEANGVDVIIKFLDTLMTQ 291
            +YLNETLP     P  L E +++G L++Y+VPIW NNIH DE  G+D  ++   TL  +
Sbjct: 220 HRYLNETLPTALEQPERLLETLEDGTLEDYQVPIWFNNIHPDEVEGIDAQMEVFRTLALE 279

Query: 292 KIVNYDTTDAKGNVVPVALDIDKALDNVIFLLDYVENPDGRALNTRATSTLLDPNRDNSY 351
             V + T D  G+   V  D++ AL++VIFL  +  NPDGR  NTR  +   D NRDN+Y
Sbjct: 280 DQVTFHTEDEDGHRKEVTFDVEDALNHVIFLFHFTHNPDGRVANTRENANGFDLNRDNAY 339

Query: 352 QTQPETQAVTAQIAKWTPLSFLDMHGFVSGFLIEPCTPPHDP 393
           QTQPET  V   I KWTPLSF+D+HG+V GFLIEP TPPH+P
Sbjct: 340 QTQPETIQVNEHIGKWTPLSFIDLHGYVEGFLIEPATPPHNP 381


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 81,046,751
Number of extensions: 3300678
Number of successful extensions: 17886
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 17883
Number of HSP's successfully gapped: 1
Length of query: 1180
Length of database: 38,378,431
Length adjustment: 118
Effective length of query: 1062
Effective length of database: 24,769,019
Effective search space: 26304698178
Effective search space used: 26304698178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 122 (51.6 bits)