BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0587.0001.p (366 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2728 [T] COG4753 Response regulator containing CheY-like recei... 109 8e-24 SP0661 [T] COG4753 Response regulator containing CheY-like recei... 98 2e-20 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 94 4e-19 BH1910 [T] COG4753 Response regulator containing CheY-like recei... 93 7e-19 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 91 2e-18 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 1/125 (0%) Query: 1 MIVDDEPLFRDYLRLKMDWQRHGFRVCCEARNGREALLEAEKHQPHLALVDINMPFMDGI 60 +IVDDE L R + DW++ GF++ EA NG++AL K++PH+ + DI MP MDGI Sbjct: 5 LIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELISKNEPHIVMTDIVMPVMDGI 64 Query: 61 ELAVKLKERFERVVIVFISGHNEFEYLQKAVRTGVQDYLLKP-FNEEEMSAMLARIRPKL 119 +L ++K F V I+ +S EFEY++ +GV DY+LKP NE+++ L+ +R K+ Sbjct: 65 DLVKRVKRDFPEVEIIVLSSFEEFEYVRSTFHSGVADYILKPRLNEKDLLKTLSEVRGKI 124 Query: 120 PQLPR 124 P L + Sbjct: 125 PALAK 129 Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 5/105 (4%) Query: 260 SNLFAAAIQ----YIEQHYADAELSAEQVAGGVYVDPSYLRRVFRKESGYSIVDHITHIR 315 SN +++IQ YIE+H+++ LS Q+A + +PSYL FR+ +++ +R Sbjct: 395 SNEGSSSIQKMLAYIEEHHSEP-LSLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVR 453 Query: 316 MKKARVLLLEGNRKLADISESVGYADPNYFSKSFKKRFGVTPTEY 360 ++KA+ L +++I VGY+D +YF K FKKR G+ P+ Y Sbjct: 454 IRKAKEWLKSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRY 498 >SP0661 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 245 Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 78/119 (65%) Query: 1 MIVDDEPLFRDYLRLKMDWQRHGFRVCCEARNGREALLEAEKHQPHLALVDINMPFMDGI 60 +IV+DE L R L ++ + + +A NGR+A +K P + L DINMP ++GI Sbjct: 6 LIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLNGI 65 Query: 61 ELAVKLKERFERVVIVFISGHNEFEYLQKAVRTGVQDYLLKPFNEEEMSAMLARIRPKL 119 +LA ++E + +V +VF++G+++F+Y AV+ GV DYLLKPF+ +++ ML +I+ KL Sbjct: 66 QLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQKL 124 Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 62/95 (65%) Query: 268 QYIEQHYADAELSAEQVAGGVYVDPSYLRRVFRKESGYSIVDHITHIRMKKARVLLLEGN 327 Q I+ H AD++ S + +A + P+YL + +KE G D++ R+K+A++LLL + Sbjct: 147 QKIQSHLADSQFSLKSLASDLGFSPTYLSSLIKKELGLPFQDYLVRERVKQAKLLLLTTD 206 Query: 328 RKLADISESVGYADPNYFSKSFKKRFGVTPTEYEQ 362 K+ +I+E VG+ D NYF++ FK+ GVTP ++++ Sbjct: 207 LKIYEIAEKVGFEDMNYFTQRFKQIAGVTPRQFKK 241 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Query: 1 MIVDDEPLFRDYLRLKMDWQRHGFRVCCEARNGREALLEAEKHQPHLALVDINMPFMDGI 60 ++ DDE R L+ ++W++ G+ V EA NG +A ++ +P L + DI MP DG+ Sbjct: 5 LLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFDGL 64 Query: 61 ELAVKLKERFE-RVVIVFISGHNEFEYLQKAVRTGVQDYLLKPFNEEEMSAMLARIRPKL 119 +L K+ E + ISG+N+F Y QKAVR G D++LKP +++E+ A L ++ L Sbjct: 65 QLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLAATL 124 Query: 120 PQ 121 Q Sbjct: 125 DQ 126 Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 218 EGDKSPFERLKACGSWEGAE---EWLTALYRRVIQ-----LTEDVKPTKASNLFAAAIQY 269 EGD +A +WE + L ++ + + + E K S+++ Y Sbjct: 371 EGDTGKIISAQAMTNWESYNLTFDQLKQVFTKFVLEAAVIIQELRKENMKSDIYKVKT-Y 429 Query: 270 IEQHYADAELSAEQVAGGVYVDPSYLRRVFRKESGYSIVDHITHIRMKKARVLLLEGNRK 329 IE HY + +S + +A Y++P Y+ ++F+K G +++ +RM +A+ LL + + + Sbjct: 430 IENHYHE-NISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMR 488 Query: 330 LADISESVGYADPNYFSKSFKKRFGVTPTEYEQLVRK 366 + +++E VG+ +YF F+K +TPTEY + K Sbjct: 489 VYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNKLLK 525 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 70/115 (60%) Query: 1 MIVDDEPLFRDYLRLKMDWQRHGFRVCCEARNGREALLEAEKHQPHLALVDINMPFMDGI 60 MIVDDE + R+ L+ + W+ +GFRV ARNG+E + + P L +VDI MP +DG+ Sbjct: 5 MIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPEVDGL 64 Query: 61 ELAVKLKERFERVVIVFISGHNEFEYLQKAVRTGVQDYLLKPFNEEEMSAMLARI 115 L ++ + + +SGH++F Y +KA+ DYLLKP +E+E+ L ++ Sbjct: 65 SLIESIRAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDELIDSLKKV 119 Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 219 GDKSPFERLKACGSWEGAEEWLTALYRRVIQLTEDVKPTKASNLFAAAIQYIEQHYADAE 278 GD FE L G +LT + VI ++ +P L I I + YA Sbjct: 364 GDIYQFEHLP------GIMAFLTKQLKYVIDCMDNGQPDL---LLRKMIALIHKDYA-KN 413 Query: 279 LSAEQVAGGVYVDPSYLRRVFRKESGYSIVDHITHIRMKKARVLLLEGNRKLADISESVG 338 L E +A + +YL ++F+ +G ++ +R++ + LL +G K+ +++E +G Sbjct: 414 LRLETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGKRLLQKG-YKVYEVAEKIG 472 Query: 339 YADPNYFSKSFKKRFGVTPTEY 360 YA+ +YF + FKK GV+P+ + Sbjct: 473 YANVDYFHRKFKKYVGVSPSTF 494 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 74/119 (62%) Query: 1 MIVDDEPLFRDYLRLKMDWQRHGFRVCCEARNGREALLEAEKHQPHLALVDINMPFMDGI 60 M+VDDEPL + L+ +DW + G+ + ARNG EAL A+ L + DI MP G+ Sbjct: 5 MLVDDEPLILEGLKHLIDWGQLGYEIVATARNGVEALEIAKYVSFDLLITDIKMPEKTGL 64 Query: 61 ELAVKLKERFERVVIVFISGHNEFEYLQKAVRTGVQDYLLKPFNEEEMSAMLARIRPKL 119 EL L ER + + + +SG EF ++++ + G+++YLLKP NE+E+ + L+ ++ K+ Sbjct: 65 ELIAALNEREKTIRSIVLSGFQEFHFVKQGLTLGIENYLLKPINEKELISTLSHVKEKI 123 Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 5/122 (4%) Query: 246 RVIQLTED----VKPTKASNLFAAAIQYIEQHYADAELSAEQVAGGVYVDPSYLRRVFRK 301 R I L ED S + +Q+I QH++ +LS + + +++P YL ++F++ Sbjct: 384 RCIDLLEDDHLQENEKNYSPIIQTVLQHIHQHFSQ-DLSLKTLGHSFHINPIYLGQLFQR 442 Query: 302 ESGYSIVDHITHIRMKKARVLLLEGNRKLADISESVGYADPNYFSKSFKKRFGVTPTEYE 361 E G S ++ +R+ +A+ LLL + I + VGY D YF K FKK +TPTE+ Sbjct: 443 EVGCSFTKYLNQLRIDRAKKLLLNSYDRAGQIGKKVGYGDATYFYKQFKKYEAMTPTEWR 502 Query: 362 QL 363 ++ Sbjct: 503 KV 504 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,983,337 Number of extensions: 998834 Number of successful extensions: 3715 Number of sequences better than 1.0e-05: 311 Number of HSP's gapped: 3834 Number of HSP's successfully gapped: 322 Length of query: 366 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 258 Effective length of database: 25,922,359 Effective search space: 6687968622 Effective search space used: 6687968622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)