BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0083.p
         (100 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    78   2e-15
BH1475 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    69   2e-12
ZflhB [NU] COG1377 Flagellar biosynthesis pathway, component FlhB      58   3e-09
ECs2590 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB    58   3e-09
ZflhB [NU] COG1377 Flagellar biosynthesis pathway, component FlhB      57   7e-09

>BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB
          Length = 92

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 66/82 (80%)

Query: 13 KKAVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSKLDLDQQI 72
          ++AVA++Y+  + +AP ++ KG+G VAD++++ A+++ V +Q+D +LVE+L +L++++ I
Sbjct: 8  RQAVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVELLGQLEINETI 67

Query: 73 PPQLYQLVAEILSYVYQSDRSA 94
          P +LY++VAE+ +++YQ D+ +
Sbjct: 68 PEELYEVVAELFAFIYQIDQHS 89


>BH1475 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB
          Length = 99

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 53/81 (65%)

Query: 13 KKAVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSKLDLDQQI 72
          + A  ++Y     +AP +VA G+G +A++I+ MAK + + +QED  LVE L  +DL   I
Sbjct: 18 RTAAVIQYDETSGDAPKLVAHGKGQIAEQIIDMAKRNNIHMQEDPLLVENLLDMDLGDNI 77

Query: 73 PPQLYQLVAEILSYVYQSDRS 93
          PPQLY ++AEIL  + + +++
Sbjct: 78 PPQLYSVMAEILLLIEEMEKN 98


>ZflhB [NU] COG1377 Flagellar biosynthesis pathway, component FlhB
          Length = 382

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 15  AVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSK-LDLDQQIP 73
           +VAL+Y   +  AP VVAKG G VA +I ++  ++ V   E   L   L + +++ QQIP
Sbjct: 273 SVALQYDENKMSAPKVVAKGAGLVALRIREIGXENNVPTLEAPPLARALYRHVEIGQQIP 332

Query: 74  PQLYQLVAEILSYVYQSDR---SAGER 97
            QLY  VAE+L++V+Q  R   + G+R
Sbjct: 333 GQLYAAVAEVLAWVWQLKRWRLAGGQR 359


>ECs2590 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB
          Length = 382

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 15  AVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSK-LDLDQQIP 73
           +VAL+Y   +  AP VVAKG G VA +I ++  ++ V   E   L   L + +++ QQIP
Sbjct: 273 SVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHVEIGQQIP 332

Query: 74  PQLYQLVAEILSYVYQSDR---SAGER 97
            QLY  VAE+L++V+Q  R   + G+R
Sbjct: 333 GQLYAAVAEVLAWVWQLKRWRLAGGQR 359



 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 15  AVALKYSPGQSEAPVVVAKGQGAVADKILQMAKDSGVAVQEDAALVEVLSK-LDLDQQIP 73
           +VAL+Y   +  AP VVAKG G VA +I ++  ++ V   E   L   L + +++ QQIP
Sbjct: 273 SVALQYDENKMSAPKVVAKGAGLVALRIREIGXENNVPTLEAPPLARALYRHVEIGQQIP 332

Query: 74  PQLYQLVAEILSYVYQSDR---SAGER 97
            QLY  VAE+L++V+Q  R   + G+R
Sbjct: 333 GQLYAAVAEVLAWVWQLKRWRLAGGQR 359


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.309    0.127    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,676,229
Number of extensions: 219130
Number of successful extensions: 571
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 9
Length of query: 100
Length of database: 38,378,431
Length adjustment: 69
Effective length of query: 31
Effective length of database: 30,420,385
Effective search space: 943031935
Effective search space used: 943031935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 109 (46.6 bits)