BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0077.p
         (379 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1994 [O] COG0606 Predicted ATPase with chaperone activity         233   3e-61
mll4667 [O] COG0606 Predicted ATPase with chaperone activity          210   2e-54
RC0437 [O] COG0606 Predicted ATPase with chaperone activity            88   2e-17

>BMEI1994 [O] COG0606 Predicted ATPase with chaperone activity
          Length = 339

 Score =  233 bits (595), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/316 (44%), Positives = 186/316 (58%), Gaps = 9/316 (2%)

Query: 59  DYSDVLGQNHVKRALMIAAAGMHNIVLIGPPGTGKTMLIKRLPGILPELGDRESLEVTKI 118
           D SD+ GQ   KRAL IAAAG HN++L+GPPG+GK+ML  RLP ILP L  RE L+V+ I
Sbjct: 18  DLSDIKGQETAKRALEIAAAGNHNLLLVGPPGSGKSMLASRLPSILPRLSPRELLDVSMI 77

Query: 119 FSAAGKLKDARSGLMRCRPFRSPHHTXXXXXXXXXXXXXXXXXXXLAHRGVLFLDELPEF 178
            S AG+L   +  L   RPFR+PHH+                   LAH GVLFLDE PEF
Sbjct: 78  ASIAGELSGGK--LSDRRPFRAPHHSASMAAMVGGGLRARPGEVSLAHNGVLFLDEFPEF 135

Query: 179 SRNVLEVLRQPLEDGVVTISRARASFTFPAQFLLACSMNPCSCGYLGSGGTQLRCTCSPA 238
           S  VL+ LRQPLE G   I+R     ++PA+F L  +MNPC CG  G  G    C   P 
Sbjct: 136 SPQVLDSLRQPLETGECLIARVNHRTSYPARFQLIAAMNPCRCGMAGEPGHT--CARGPR 193

Query: 239 KIAQYRSKISGPLLDRIDMQVDVPRPT--DWEGQGPSLSSAEMRAEVLKVQAIQAERYKS 296
             + Y+++ISGPLLDRID++VD+P  +  D    G S  S  +   V + +A+QA RY +
Sbjct: 194 CQSDYQARISGPLLDRIDLRVDMPAVSALDLIAPGQSEKSETVARRVARARAVQAARYGA 253

Query: 297 L---PIAWNSELSGAALRHYARLHKDGRELLNDILENLGLSMRAHDRIIKLARTIADLEG 353
           L   P   N+  S   +   AR    G +LL D  E +  S RA+ RI+K+ART+ADL+G
Sbjct: 254 LGLDPSMTNAYCSANLIEEVARPDAAGMKLLRDASEQMRFSARAYHRILKVARTLADLDG 313

Query: 354 AVDISSAHLAEAVQYR 369
           +  ++  HLA A+ YR
Sbjct: 314 SDHVTRIHLAGAISYR 329


>mll4667 [O] COG0606 Predicted ATPase with chaperone activity
          Length = 296

 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/290 (41%), Positives = 166/290 (57%), Gaps = 9/290 (3%)

Query: 85  LIGPPGTGKTMLIKRLPGILPELGDRESLEVTKIFSAAGKLKDARSGLMRCRPFRSPHHT 144
           ++GPPG+GK+ML +RLP ILP L  +E LEV+ I S AG+L + +  L   RPFR+PHH+
Sbjct: 1   MVGPPGSGKSMLAQRLPSILPPLAPKELLEVSMIASVAGELGEGK--LTDRRPFRAPHHS 58

Query: 145 XXXXXXXXXXXXXXXXXXXLAHRGVLFLDELPEFSRNVLEVLRQPLEDGVVTISRARASF 204
                              LAH GVLFLDE PEF+   L+ LRQPLE G   I+RA    
Sbjct: 59  ASMAAMVGGGLRARPGEVSLAHHGVLFLDEFPEFTPQTLDALRQPLETGDCMIARANHRV 118

Query: 205 TFPAQFLLACSMNPCSCGYLGSGGTQLRCTCSPAKIAQYRSKISGPLLDRIDMQVDVP-- 262
           T+PA+  L  +MNPC CG  G  G   RC         Y+++ISGPLLDRID++++VP  
Sbjct: 119 TYPARIQLVAAMNPCRCGMAGEPG--YRCVRGERCRTDYQARISGPLLDRIDLRIEVPAV 176

Query: 263 RPTDWEGQGPSLSSAEMRAEVLKVQAIQAERYKSLPI---AWNSELSGAALRHYARLHKD 319
             +D      +  SA++   V + + +Q ER++ L +     N+  + A + + A     
Sbjct: 177 SASDLIRPDRAEKSADVALRVARARTLQRERFERLGVTSATTNAHCAPAVIENIAMPDAS 236

Query: 320 GRELLNDILENLGLSMRAHDRIIKLARTIADLEGAVDISSAHLAEAVQYR 369
           G  LL D  E L  S RA+ R++K+ART+ADLE +  +   HLAEA+ YR
Sbjct: 237 GLSLLKDASEKLAFSARAYHRVLKVARTLADLEASETVGRIHLAEAISYR 286


>RC0437 [O] COG0606 Predicted ATPase with chaperone activity
          Length = 168

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 236 SPAKIAQYRSKISGPLLDRIDMQVDVPRPT----DWEGQGPSLSSAEMRAEVLKVQAIQA 291
           +P   + Y+ K+SGP++DR D+ ++V        D         S  + A V KV+ IQ 
Sbjct: 3   APKCASDYQMKVSGPIMDRFDLHIEVSSINVYNYDLIVDNSEEESEYIAARVEKVRLIQE 62

Query: 292 ERYKSLPIAWNSELSGAALRHYARLHKDGRELLNDILENLGLSMRAHDRIIKLARTIADL 351
           +RY+   I  N+ L G  L   A    +G++LLN+      LSMRA++RI+++ARTIADL
Sbjct: 63  KRYEGYNIKTNNRLDGQLLIDCAIPADEGKDLLNEAANKFCLSMRAYNRILRVARTIADL 122

Query: 352 EGAVDISSAHLAEAVQYRNLD 372
           +    +   H+AEA+ YR ++
Sbjct: 123 KNVDKVLKVHIAEALSYRKIE 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 25,939,959
Number of extensions: 1044035
Number of successful extensions: 16691
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 16682
Number of HSP's successfully gapped: 3
Length of query: 379
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 271
Effective length of database: 25,922,359
Effective search space: 7024959289
Effective search space used: 7024959289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)