BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0076.p
         (75 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ykzA [O] COG1764 Predicted redox protein, regulator of disulf...    54   8e-08
BS_yklA [O] COG1764 Predicted redox protein, regulator of disulf...    52   2e-07
VCA1006 [O] COG1764 Predicted redox protein, regulator of disulf...    52   2e-07
AGc1547 [O] COG1764 Predicted redox protein, regulator of disulf...    47   5e-06
SMc00040 [O] COG1764 Predicted redox protein, regulator of disul...    47   1e-05

>BS_ykzA [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation
          Length = 136

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 2   VARMGKVKIEGSEVTATVSFGKVE-DGGFGIAXXXXXXXXXXXXETAARLVEAAHGACPY 60
           VA+   ++I+ SE+   VS  K E DGGF I             E A  LV AAH  CPY
Sbjct: 63  VAKEQNIEID-SEIEGQVSLMKDESDGGFKIGVTLVVNTKDLDREKAQELVNAAHEFCPY 121

Query: 61  SRATRGNIVVELNV 74
           S+ATRGN+ V+L +
Sbjct: 122 SKATRGNVDVKLEL 135


>BS_yklA [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation
          Length = 141

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 1   MVARMGKVKIEGSEVTATVSFGKVE-DGGFGIAXXXXXXXXXXXXETAARLVEAAHGACP 59
           +VAR  +VK+E +EVTA VS  K E D G+ +                  LV+ AHG CP
Sbjct: 66  LVARTERVKVE-TEVTANVSLLKDEADQGYKLGVTLQVKGEGVSASELEALVKKAHGVCP 124

Query: 60  YSRATRGNIVVELNV 74
           YS+AT GNI V L V
Sbjct: 125 YSKATSGNIDVTLEV 139


>VCA1006 [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation
          Length = 145

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 2   VARMGKVKIEGSEVTATVSFGKVEDGGFGIAXXXXXXXXXXXXETAARLVEAAHGACPYS 61
           VAR  KV ++ + VTATV  G    GGF ++            E A +LV  AH  CPYS
Sbjct: 69  VAREAKVALKEAPVTATVGIGPNGQGGFALSVALAAHIALED-EQARQLVTVAHQVCPYS 127

Query: 62  RATRGNIVVELNV 74
            A RGNI V+++V
Sbjct: 128 NAVRGNIDVQVSV 140


>AGc1547 [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation
          Length = 370

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 3/75 (4%), Positives = 8/75 (10%), Gaps = 2/75 (2%)

Query: 2   VARMGKVKI-EGSEVTATVSFGKVEDG-GFGIAXXXXXXXXXXXXETAARLVEAAHGACP 59
                  +  +  E  +         G    +                            
Sbjct: 65  GQVNSPEQARQFFETNSVPFRISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPE 124

Query: 60  YSRATRGNIVVELNV 74
                  N     + 
Sbjct: 125 LVDIDNDNRPDGFDP 139


>SMc00040 [O] COG1764 Predicted redox protein, regulator of disulfide bond
           formation
          Length = 140

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 1   MVARMGKVKI-EGSEVTATVSFGKVEDG-GFGIAXXXXXXXXXXXXETAARLVEAAHGAC 58
            VA   KVK+ E + VT TV  G  +DG GF I                  LV+ AH  C
Sbjct: 64  FVAGKEKVKLAEDTTVTGTVGIGPRDDGTGFFIDAALEISSPGVEKAVLEDLVQKAHIVC 123

Query: 59  PYSRATRGNIVVELNV 74
           PYS ATRGN+ V+L V
Sbjct: 124 PYSHATRGNVDVKLTV 139


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 3,851,945
Number of extensions: 72760
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 38,378,431
Length adjustment: 46
Effective length of query: 29
Effective length of database: 33,073,067
Effective search space: 959118943
Effective search space used: 959118943
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)