BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0074.p
         (154 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0915 [K] COG1846 Transcriptional regulators                         140   1e-33
SMc00098 [K] COG1846 Transcriptional regulators                       133   9e-32
AGl463 [E] COG0165 Argininosuccinate lyase                            130   9e-31
AGc1544 [K] COG1846 Transcriptional regulators                        130   9e-31
VCA1005 [K] COG1846 Transcriptional regulators                        125   4e-29

>CC0915 [K] COG1846 Transcriptional regulators
          Length = 148

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 85/111 (76%)

Query: 10  LLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEALFLD 69
           L L+NQLCF +Y  +   T+LY+P LD +GLTY QYL MLVLWE +  TV  LGEAL LD
Sbjct: 15  LRLDNQLCFALYGAANRMTRLYRPLLDALGLTYPQYLAMLVLWEASPRTVGALGEALDLD 74

Query: 70  SGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKM 120
           S TLTPLLKRL+A GL+ R+R  +DER+V+++LT++GRAL+ +A  IP K+
Sbjct: 75  SSTLTPLLKRLEAGGLVTRDRDPEDERRVIVALTDKGRALRDQAVTIPEKV 125


>SMc00098 [K] COG1846 Transcriptional regulators
          Length = 158

 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 96/143 (67%), Gaps = 4/143 (2%)

Query: 3   ETNTTPELLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKEL 62
           + ++   L L  QLCF +Y+ +  F + Y+P LD+ GLTY QYLV+L LW++++ TVK +
Sbjct: 9   DADSDEALALGRQLCFAVYSAAHAFNRAYKPLLDRFGLTYPQYLVLLTLWQQDRMTVKRI 68

Query: 63  GEALFLDSGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAE 122
           GE L LDSGTL+PLLKRL+AAG + R R   DER+V++SLT+ GR LK+EA  I   +  
Sbjct: 69  GEELGLDSGTLSPLLKRLEAAGYVRRVRDAADERQVIVSLTDGGRELKAEAFGILRDIGS 128

Query: 123 GTMLSADEFVGLLGQFKDLLARV 145
            +  S +E    +G+ +D L R+
Sbjct: 129 ASGCSLEE----VGELRDALHRL 147


>AGl463 [E] COG0165 Argininosuccinate lyase
          Length = 200

 Score =  130 bits (327), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 8/114 (7%), Positives = 20/114 (17%)

Query: 16  LCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEALFLDSGTLTP 75
           +          FT  +           + +       E  +    +    L      +  
Sbjct: 19  VADKYRLPEEFFTTRFLVRRIVPTDAEAIFEGWNTDPEVTKYLTWKPHSELGQTQRAIEE 78

Query: 76  LLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAEGTMLSAD 129
                 A          ++    LI   +        +     +        A 
Sbjct: 79  NYSAWNAGTSFPAVICHRERPHELIGRIDARPMGHKVSYGWLVRRTWWGRGVAS 132


>AGc1544 [K] COG1846 Transcriptional regulators
          Length = 370

 Score =  130 bits (326), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 6/132 (4%), Positives = 20/132 (15%)

Query: 10  LLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKELGEALFLD 69
            L                T L      K   T +  +    L    +   +    +    
Sbjct: 14  DLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQA 73

Query: 70  SGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAEGTMLSAD 129
                      + +    +   +    +  + ++     +                    
Sbjct: 74  RQFFETNSVPFRISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNR 133

Query: 130 EFVGLLGQFKDL 141
                       
Sbjct: 134 PDGFDPSYAFGK 145


>VCA1005 [K] COG1846 Transcriptional regulators
          Length = 152

 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 89/132 (67%)

Query: 3   ETNTTPELLLENQLCFTIYACSREFTKLYQPHLDKIGLTYSQYLVMLVLWERNQCTVKEL 62
           +T T   LLLENQ+CF +Y+ S    + Y+P L+++ +TYSQYLV+LVLW++N   VK+L
Sbjct: 9   QTPTHDPLLLENQVCFPLYSASNAVIRAYRPLLEQLDITYSQYLVLLVLWQQNGINVKDL 68

Query: 63  GEALFLDSGTLTPLLKRLQAAGLILRERSLQDERKVLISLTEQGRALKSEAACIPGKMAE 122
           G  L LDSGTLTPLLKRL+A G++ R RS  DER   + LT  G AL+ +A  +P +M  
Sbjct: 69  GIKLHLDSGTLTPLLKRLEAKGIVERRRSSSDERVRELFLTPAGFALQEQARSVPNEMLC 128

Query: 123 GTMLSADEFVGL 134
              LS +E + L
Sbjct: 129 KFDLSLEELISL 140


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,121,136
Number of extensions: 338119
Number of successful extensions: 1525
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 1528
Number of HSP's successfully gapped: 29
Length of query: 154
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 57
Effective length of database: 27,191,033
Effective search space: 1549888881
Effective search space used: 1549888881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)