BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0068.p
         (168 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc701 [E] COG3938 Proline racemase                                   195   3e-50
AGc706 [G] COG0524 Sugar kinases, ribokinase family                   195   3e-50
RSc0043 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptid...   169   2e-42

>AGc701 [E] COG3938 Proline racemase
          Length = 232

 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 13/168 (7%), Positives = 27/168 (16%), Gaps = 3/168 (1%)

Query: 1   VRHNGQAAIAGDGQVTFGESVIMKTTARKVRRLYRGQVIAGFAGSVADAITLFEKFEGKL 60
                      D  +        +   +        + +A  A      I       G  
Sbjct: 50  HPDALAVHGITDEFLKDKPKF-AEVIDQIREFFDGARWVAHNATFDMGFINAEFARLGIE 108

Query: 61  EEHHGNLQRAAVELAKDWRQDRILRKLEALMIVMDKEGMLLISGNGEIIEPDDDVLAIGS 120
                 +        +                 +D           +     +  + +  
Sbjct: 109 PVSAELVTDTLSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG 168

Query: 121 GGNFALASGRALKRHASNLSAPEIAKEALQIASEICVYTNSNIIVEQL 168
           G   AL  G A       +   E    A                +   
Sbjct: 169 GRQTALGFGSAA--RQETIIIEEDVPLAPLQRPSALPSRLDADTIAAH 214


>AGc706 [G] COG0524 Sugar kinases, ribokinase family
          Length = 232

 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 13/168 (7%), Positives = 27/168 (16%), Gaps = 3/168 (1%)

Query: 1   VRHNGQAAIAGDGQVTFGESVIMKTTARKVRRLYRGQVIAGFAGSVADAITLFEKFEGKL 60
                      D  +        +   +        + +A  A      I       G  
Sbjct: 50  HPDALAVHGITDEFLKDKPKF-AEVIDQIREFFDGARWVAHNATFDMGFINAEFARLGIE 108

Query: 61  EEHHGNLQRAAVELAKDWRQDRILRKLEALMIVMDKEGMLLISGNGEIIEPDDDVLAIGS 120
                 +        +                 +D           +     +  + +  
Sbjct: 109 PVSAELVTDTLSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIG 168

Query: 121 GGNFALASGRALKRHASNLSAPEIAKEALQIASEICVYTNSNIIVEQL 168
           G   AL  G A       +   E    A                +   
Sbjct: 169 GRQTALGFGSAA--RQETIIIEEDVPLAPLQRPSALPSRLDADTIAAH 214


>RSc0043 [O] COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit
          Length = 178

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 129/168 (76%), Gaps = 2/168 (1%)

Query: 1   VRHNGQAAIAGDGQVTFGESVIMKTTARKVRRLYRGQVIAGFAGSVADAITLFEKFEGKL 60
           VR   Q A+ GDGQVT G +++MK TARKVR +Y G+V+ GFAG+ ADA +L ++FE KL
Sbjct: 12  VRRGNQVALGGDGQVTLG-NIVMKGTARKVRTIYDGKVLVGFAGATADAFSLLDRFEAKL 70

Query: 61  EEHHGNLQRAAVELAKDWRQDRILRKLEALMIVMDKEGMLLISGNGEIIEPDDDVLAIGS 120
           +++ G+L RAAV+LAKDWR DR LR LEA++IV D+E  L+I+GNG++++P+  + AIGS
Sbjct: 71  QKYQGHLLRAAVDLAKDWRTDRALRHLEAMLIVADRESTLVITGNGDVLDPEGGIAAIGS 130

Query: 121 GGNFALASGRALKRHASNLSAPEIAKEALQIASEICVYTNSNIIVEQL 168
           GG +A ++ +AL  + + L+  ++ +++L+IA E+C+YTN+N ++E L
Sbjct: 131 GGAYAQSAAKALMEN-TELAPRDVVEKSLRIAGELCIYTNTNFVIETL 177


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,792,233
Number of extensions: 467026
Number of successful extensions: 1135
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 3
Length of query: 168
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 69
Effective length of database: 26,960,365
Effective search space: 1860265185
Effective search space used: 1860265185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)