BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0065.p
         (149 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1365_1 [C] COG0277 FAD/FMN-containing dehydrogenases               139   1e-33
STM1365_2 [C] COG0247 Fe-S oxidoreductase                             139   1e-33
YPO1800 [N] COG1558 Flagellar basal body rod protein                  112   2e-25
YPO0723 [N] COG1558 Flagellar basal body rod protein                   91   4e-19

>STM1365_1 [C] COG0277 FAD/FMN-containing dehydrogenases
          Length = 548

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 9/142 (6%), Positives = 28/142 (19%), Gaps = 13/142 (9%)

Query: 9   ISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDSFSNILNSK 68
                +      ++        A +    +           +                  
Sbjct: 10  GVVQLVLNFLQALEQQGFTGDTATSYADRLTM----STDNSIYQ--------LLPDAVVF 57

Query: 69  MNSD-GSQGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKEMVDMLSASRSY 127
             S      +   +     + L           +         VD+++ M  ++  +   
Sbjct: 58  PRSTADVALLARLAAEPRFTSLIFTPRGGGTGTNGQALNQGIIVDMSRYMNRIIEINPEE 117

Query: 128 DANVTMLNASKGMVTKALEIGR 149
                     K  + +AL+   
Sbjct: 118 GWVRVEAGVIKDQLNQALKPYG 139


>STM1365_2 [C] COG0247 Fe-S oxidoreductase
          Length = 346

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 10/142 (7%), Positives = 24/142 (16%), Gaps = 13/142 (9%)

Query: 9   ISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDSFSNILNSK 68
               +            ++ A+A       V          + V                
Sbjct: 10  SLEVSTLGLGTMTFGEQNSEADAHAQLDYAVA----QGINLIDV--------AEMYPVPP 57

Query: 69  MNSD-GSQGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKEMVDMLSASRSY 127
                G     V + +      + +   S     +         D   +  ++  A    
Sbjct: 58  RPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDS 117

Query: 128 DANVTMLNASKGMVTKALEIGR 149
              +         V        
Sbjct: 118 LKRLQTDYLDLYQVHWPQRPTN 139


>YPO1800 [N] COG1558 Flagellar basal body rod protein
          Length = 134

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 15/143 (10%)

Query: 7   FGISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDSFSNILN 66
           F I+ SAL+AQ  RM+V +SN+ANA++      DG+  PYR K VV +            
Sbjct: 7   FDIAGSALSAQSQRMNVSASNLANADSVTGP--DGQ--PYRAKQVVFQV----------- 51

Query: 67  SKMNSDGSQGVKVQSIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKEMVDMLSASRS 126
           +      + GV+V  I++D SP + VY P +P ADA GYV MPNVD+T EMV+ +SASRS
Sbjct: 52  AAQPGQETGGVRVAQIVDDPSPDRLVYQPGNPLADAKGYVRMPNVDVTGEMVNTISASRS 111

Query: 127 YDANVTMLNASKGMVTKALEIGR 149
           Y ANV +LN +K ++ K L +G+
Sbjct: 112 YQANVEVLNTTKSLMLKTLTLGQ 134


>YPO0723 [N] COG1558 Flagellar basal body rod protein
          Length = 141

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 90/152 (59%), Gaps = 17/152 (11%)

Query: 1   MNFGSSFGISASALTAQRLRMDVISSNIANAETTRASVVDGKAVPYRRKLVVLETNQNDS 60
           M+F   + ++ SA+TAQ +R++ I+SN+ANAE+  AS     A  Y+ +  V        
Sbjct: 1   MSFNQIYRVAGSAMTAQTIRLNTIASNLANAESPAASA----ATVYKARSPV-------- 48

Query: 61  FSNILNSKMNSD--GSQGVKVQ--SIIEDSSPLKPVYNPSHPDADADGYVYMPNVDITKE 116
           FS + +++  +D  G Q  +VQ   ++E    ++  Y P+HP A+  GYV+ P V++  E
Sbjct: 49  FSAVYSARTAADPRGVQSAQVQVLDVVEVGGSVQR-YEPNHPMANPQGYVFYPAVNVVSE 107

Query: 117 MVDMLSASRSYDANVTMLNASKGMVTKALEIG 148
           M DM+SASRS++ NV +LN+ K M    L++G
Sbjct: 108 MADMMSASRSFETNVEVLNSVKSMQQSVLKLG 139


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.311    0.125    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,166,226
Number of extensions: 313692
Number of successful extensions: 601
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 4
Length of query: 149
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 52
Effective length of database: 27,191,033
Effective search space: 1413933716
Effective search space used: 1413933716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)