BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0048.p
         (114 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2444 [T] COG0784 FOG: CheY-like receiver                            197   4e-51
BS_cheY [T] COG0784 FOG: CheY-like receiver                           196   5e-51
STM0700 [E] COG0531 Amino acid transporters                           175   1e-44
TM0700 [T] COG0784 FOG: CheY-like receiver                            175   1e-44
CAC2218 [T] COG0784 FOG: CheY-like receiver                           169   1e-42

>BH2444 [T] COG0784 FOG: CheY-like receiver
          Length = 121

 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 106/113 (93%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDA+FMRMMI+DIL+KNG++VVGEA DG QA+EK+KEL PDL+TMDITMPE DGIAALK
Sbjct: 8   VDDASFMRMMIKDILTKNGYDVVGEAHDGEQAVEKYKELSPDLVTMDITMPEKDGIAALK 67

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 113
           +I+ +D NAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVI+AI KTLG
Sbjct: 68  DIRAIDPNAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIDAIQKTLG 120


>BS_cheY [T] COG0784 FOG: CheY-like receiver
          Length = 120

 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 106/113 (93%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMMI+DIL KNGFEVV EA++G+QA+EK+KE  PDL+TMDITMPEMDGI ALK
Sbjct: 8   VDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEMDGITALK 67

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 113
           EIK++DA A++IMCSAMGQQ+MVIDAIQAGAKDFIVKPFQADRV+EAINKTL 
Sbjct: 68  EIKQIDAQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLN 120


>STM0700 [E] COG0531 Amino acid transporters
          Length = 439

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 7/110 (6%), Positives = 25/110 (22%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
                 + ++    +  +G  ++         I     L   + +M +           +
Sbjct: 8   KMGVVQLTILTMVNMMGSGIIMLPTKLSEVGTISIISWLVTAVGSMALAWAFAKCGMFSR 67

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINK 110
           +   +   A+     +    A     +     +  +         E    
Sbjct: 68  KSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA 117


>TM0700 [T] COG0784 FOG: CheY-like receiver
          Length = 120

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 101/110 (91%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMM++DI++K G+EV GEA +G +A+EK+KEL+PD++TMDITMPEM+GI A+K
Sbjct: 8   VDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIK 67

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINK 110
           EI K+D NAK+I+CSAMGQQAMVI+AI+AGAKDFIVKPFQ  RV+EA+NK
Sbjct: 68  EIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNK 117


>CAC2218 [T] COG0784 FOG: CheY-like receiver
          Length = 119

 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 98/113 (86%)

Query: 1   VDDAAFMRMMIRDILSKNGFEVVGEAQDGSQAIEKFKELRPDLITMDITMPEMDGIAALK 60
           VDDAAFMRMMI+DIL KNGFE+VGEA +G +A+E +K+ +PD++TMDITMP+MDGI A+K
Sbjct: 7   VDDAAFMRMMIKDILEKNGFEIVGEASNGLKAVEIYKKEKPDVVTMDITMPDMDGIEAVK 66

Query: 61  EIKKVDANAKVIMCSAMGQQAMVIDAIQAGAKDFIVKPFQADRVIEAINKTLG 113
            IK  D  A+VIMCSAMGQQ MV+DAI+AGA+DFIVKPFQ DRV+EAI K LG
Sbjct: 67  AIKAFDPAARVIMCSAMGQQTMVMDAIRAGARDFIVKPFQQDRVLEAIKKALG 119


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.136    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,541,221
Number of extensions: 252000
Number of successful extensions: 1646
Number of sequences better than 1.0e-05: 468
Number of HSP's gapped: 1525
Number of HSP's successfully gapped: 468
Length of query: 114
Length of database: 38,378,431
Length adjustment: 81
Effective length of query: 33
Effective length of database: 29,036,377
Effective search space: 958200441
Effective search space used: 958200441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)