BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0039.p (282 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BB0269 [D] COG0455 ATPases involved in chromosome partitioning 202 5e-52 TP0712 [D] COG0455 ATPases involved in chromosome partitioning 197 1e-50 MJ0547 [D] COG0455 ATPases involved in chromosome partitioning 122 8e-28 AF0696 [D] COG0455 ATPases involved in chromosome partitioning 110 2e-24 MJ0169 [D] COG0455 ATPases involved in chromosome partitioning 97 2e-20 >BB0269 [D] COG0455 ATPases involved in chromosome partitioning Length = 295 Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 14 ASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNLY 73 + R I V SGKGGVGKSN + AL +GK+VL+ DADIGMAN+++L+GV KY++Y Sbjct: 29 SKTRFIAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGVIPKYSIY 88 Query: 74 HLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILFD 133 H++ + DI E+I K + +AG SG EL LS+ D++ F ++ I + D ++ D Sbjct: 89 HMIAQSRDIREVITKTEYNIDLLAGASGTMELLDLSDVDVNKFIKELLKIYE-YDIVVID 147 Query: 134 TGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKV-SFRLIVNQAGDE 192 T AG+S++ + F+ S+DD ++VTTPEPT+ITDAY +IKV++ + + RLIVN+ + Sbjct: 148 TSAGISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANV 207 Query: 193 KEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAA 246 EA + K+ + +FL L+I +LG+I D ++ +V +Q PF + PNS A+ Sbjct: 208 SEAKGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVLVNPNSKAS 261 >TP0712 [D] COG0455 ATPases involved in chromosome partitioning Length = 304 Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 164/277 (59%), Gaps = 6/277 (2%) Query: 7 KRASGGEASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGV 66 +R + R++ V SGKGGVGK+N N A+ MGK+V+L DAD+G+AN++V+M V Sbjct: 30 ERVERHQHRTRVVVVTSGKGGVGKTNIATNMAIAYGYMGKKVVLIDADLGLANVNVIMNV 89 Query: 67 SAKYNLYHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADT 126 +YNLYH++K++ + +II G+ IAG SG ++ +L+E + + F ++ +++T Sbjct: 90 VPQYNLYHVIKKQKKMSDIIIDTNFGIKLIAGASGFSKIANLNEEERAAFIQELYSLSET 149 Query: 127 MDFILFDTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNS--HPKVSFRL 184 D I+ DT AG+SK + F+ SADD +VVTT EPTAITDAY +IK++ + ++ ++ Sbjct: 150 -DIIIIDTSAGVSKNVVSFVASADDVIVVTTAEPTAITDAYGMIKIIATEVDNRDMNLKM 208 Query: 185 IVNQAGDEKEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSS 244 IVN+ E S+++ A++FL L + +LG+I DT V +V RQ+PF + P Sbjct: 209 IVNRVNSAAEGRRISERMIQIAAQFLNLKLDYLGFIYDDTSVGASVLRQVPFLIHEPRGK 268 Query: 245 AAKDVHRXXXXXXXXXXXXTTKVQGIKGFISKWLKRK 281 A+ + T G+ GFI + R+ Sbjct: 269 ASVCLRHIVAKLEKTEIAETG---GLSGFIRRIFGRE 302 >MJ0547 [D] COG0455 ATPases involved in chromosome partitioning Length = 264 Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 136/262 (51%), Gaps = 13/262 (4%) Query: 19 ITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAK-YNLYHLLK 77 I + SGKGG GK+ + N A+ L GK+V + DADI MAN++++MG+ K L +L Sbjct: 9 IAIASGKGGTGKTTISANLAVALAKFGKKVAVLDADIAMANLELIMGLEGKPVTLNDVLA 68 Query: 78 READIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILFDTGAG 137 +ADI + I++GP+G+ I G +++ A + + I D ++ ++ D AG Sbjct: 69 GKADIKDAIYEGPEGVLVIPAGVSLEK---FRRAKPEKLEEVLKAIHDLVEILIIDCPAG 125 Query: 138 LSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDEKEAHA 197 + KET+ I+SAD +VV PE ++I+DA +I + + IVN+ +E Sbjct: 126 IGKETLIAISSADGLIVVVNPEISSISDALKIIAITKRLGTDI-IGAIVNRVSNE----- 179 Query: 198 TSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDVHRXXXXXX 257 S ++ + A + L++ +G + D HV +A P + +P+S AA+ + Sbjct: 180 -STELGVKAIETI-LEVPVIGVVPEDPHVRKAAAFGTPLVIMYPDSPAAQAIMEIAAKLI 237 Query: 258 XXXXXXTTKVQGIKGFISKWLK 279 K + + FISK++K Sbjct: 238 GAKYEAQLKKKK-ESFISKFIK 258 >AF0696 [D] COG0455 ATPases involved in chromosome partitioning Length = 263 Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 14/235 (5%) Query: 17 RIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSA-KYNLYHL 75 R ITV SGKGG GK+ T N + L +G V + DADI MAN+++++G+ L ++ Sbjct: 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNV 62 Query: 76 LKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILFDTG 135 L EA I E I+ GP G+ + G ++ L +A+ D +T I ++ D +L D Sbjct: 63 LAGEARIDEAIYVGPGGVKVVPAGVSLE---GLRKANPEKLEDVLTQIMESTDILLLDAP 119 Query: 136 AGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDEKEA 195 AGL + + I +A + L+V PE ++ITD V KV ++VN+ Sbjct: 120 AGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKV-LGVVVNR------- 171 Query: 196 HATSDKIRMAASRFLQ-LDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDV 249 T+ I MA + L+ +G I D V +A P + PNS AA+ + Sbjct: 172 -ITTLGIEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAI 225 >MJ0169 [D] COG0455 ATPases involved in chromosome partitioning Length = 263 Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 18 IITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKY-NLYHLL 76 IIT+ SGKGGVGK+ + + A+ L +GK+VL D DI MAN+ +L + K +L+ +L Sbjct: 5 IITIASGKGGVGKTTTSASLAVALAKLGKKVLAIDGDISMANLGILFNMEKKKPSLHEVL 64 Query: 77 KREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILFDTGA 136 EAD+ + I+K G+ + ++ ++D+ D + +AD D+++ D A Sbjct: 65 SEEADVRDAIYKHKTGVYVLPTSLSLE---GYKKSDIDLLPDVVNEVADDFDYVIIDAPA 121 Query: 137 GLSKETMKFITSADDCLVVTTPEPTAITDAYAL 169 GL++E + AD L+V TPE +I DA L Sbjct: 122 GLNREMATHLAIADKLLLVVTPEMFSIIDAVRL 154 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,839,794 Number of extensions: 728426 Number of successful extensions: 1732 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 1720 Number of HSP's successfully gapped: 41 Length of query: 282 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 177 Effective length of database: 26,268,361 Effective search space: 4649499897 Effective search space used: 4649499897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)