BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0036.p
         (153 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2969 [NT] COG0835 Chemotaxis signal transduction protein            158   3e-39
BS_cheW [NT] COG0835 Chemotaxis signal transduction protein           113   9e-26
STM1920 [NT] COG0835 Chemotaxis signal transduction protein           112   3e-25
TM0718 [NT] COG0835 Chemotaxis signal transduction protein            108   2e-24

>BH2969 [NT] COG0835 Chemotaxis signal transduction protein
          Length = 155

 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 107/141 (75%), Gaps = 1/141 (0%)

Query: 4   DIKVIVFKLGTEEYGIEVDKVQTIERMMPITRVPKTYSFIKGVINLRGVVIPVIDLRGRF 63
           D+K+IVF+LG EEY IEVD +Q+IERM P+TR+P T S++ GV+NLRGV+ PVI+LR RF
Sbjct: 11  DLKLIVFQLGDEEYAIEVDYIQSIERMQPVTRIPGTPSYVIGVMNLRGVITPVINLRARF 70

Query: 64  GIEEAEHTDQTRIIIVAVNEMEVGFIVDSANDVIDLNQDAIDTPPDVVGGIKAKYLDGVA 123
           G+    H D TRI+++A + +E+GF+VD ANDV+D+  + I+  P+VVGG++  YL GV 
Sbjct: 71  GLPAKAHDDSTRILVIADDGVEIGFVVDGANDVVDVPAEKIEPTPEVVGGVQEDYLRGVV 130

Query: 124 KIGEDRLLIMLNLSEVLNKNE 144
           K  EDRL  +LNL +V+ + +
Sbjct: 131 K-EEDRLFTLLNLEKVIQRKK 150


>BS_cheW [NT] COG0835 Chemotaxis signal transduction protein
          Length = 156

 Score =  113 bits (283), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 1/137 (0%)

Query: 6   KVIVFKLGTEEYGIEVDKVQTIERMMPITRVPKTYSFIKGVINLRGVVIPVIDLRGRFGI 65
           K+IVF +  +EY I V +V++IE+    TRVP    +I GVINLRGVV PVIDLR R  +
Sbjct: 10  KMIVFMVNGKEYAISVTQVKSIEKWQKPTRVPGVEPYICGVINLRGVVTPVIDLRKRLNL 69

Query: 66  EEAEHTDQTRIIIVAVNEMEVGFIVDSANDVIDLNQDAIDTPPDVVGGIKAKYLDGVAKI 125
            E E TD+TRIII+A  ++EVG+IVD ANDVI +++  I++ P+ V       ++ + K 
Sbjct: 70  PEYEITDETRIIIIAYRDIEVGWIVDEANDVITVHESEIESAPEGVQKDTDVSIEQIVK- 128

Query: 126 GEDRLLIMLNLSEVLNK 142
            E+RLL +++ + VL+K
Sbjct: 129 QENRLLNIIDANAVLDK 145



 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 0/143 (0%), Positives = 0/143 (0%), Gaps = 1/143 (0%)

Query: 8   IVFKLGTEEYGIEVDKVQTIERMMPITRVPKTYSFIKGVINLRGVVIPVIDLRGRFGIEE 67
                 T+   IE  +  T    +                 +       +          
Sbjct: 20  EYAISVTQVKSIEKWQKPTRVPGVEPYICGVINLRGVVTPVIDLRKRLNLPEYEITDETR 79

Query: 68  AEHTDQTRIIIVAVNEMEVGFIVDSANDVIDLNQDAIDTPPDVVGGIKAKYLDGVAKIGE 127
                   I +  + +     I    +++    +         +  I  +    +  I  
Sbjct: 80  IIIIAYRDIEVGWIVDEANDVITVHESEIESAPEGVQKDTDVSIEQIVKQENRLLNIID- 138

Query: 128 DRLLIMLNLSEVLNKNEIVQLES 150
                                  
Sbjct: 139                         161


>STM1920 [NT] COG0835 Chemotaxis signal transduction protein
          Length = 167

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 92/142 (64%), Gaps = 1/142 (0%)

Query: 8   IVFKLGTEEYGIEVDKVQTIERMMPITRVPKTYSFIKGVINLRGVVIPVIDLRGRFGIEE 67
           +VF LG EEYGI++ KVQ I     +TR+  T +FIKGV NLRGV++P++DLR +F   +
Sbjct: 20  LVFTLGNEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRVKFCEGD 79

Query: 68  AEHTDQTRIIIVAVNEMEVGFIVDSANDVIDLNQDAIDTPPDVVGGIKAKYLDGVAKIGE 127
            E+ D T +I++ + +  VG +VD  +DV+ L  + I   P+    +  +YL G+  +GE
Sbjct: 80  VEYDDNTVVIVLNLGQRVVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGE 139

Query: 128 DRLLIMLNLSEVLNKNEIVQLE 149
            R+LI++N+ ++LN  E+  L+
Sbjct: 140 -RMLILVNIEKLLNSEEMALLD 160


>TM0718 [NT] COG0835 Chemotaxis signal transduction protein
          Length = 152

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 1   MAEDIKVIVFKLGTEEYGIEVDKVQTIERMMPITRVPKTYSFIKGVINLRGVVIPVIDLR 60
           M  ++KV+ FKLG + +G+++ KV++I  +  I  VP+T  +I+GV+NLRG +IPV++LR
Sbjct: 1   MKMELKVVTFKLGNQVFGVDIMKVESIVEVEKIVPVPETAEYIEGVMNLRGKIIPVVNLR 60

Query: 61  GRFGIEEAEHTDQTRIIIVAVNEMEVGFIVDSANDVIDLNQDAIDTPPDVVGGIKAKYLD 120
            +F + + E   + +II+  V    +GF+VD  ++V+ L +  I+ PP  + G    Y+ 
Sbjct: 61  KKFKMPDMEDKKRAKIIVSMVKNTLIGFLVDDVSEVLTLTESDIEQPPQNLAGKGKNYIL 120

Query: 121 GVAKIGEDRLLIMLNLSEVLNKNEIVQLESL 151
           G+AK+ +D ++I+LN+ EVL   E+V++ ++
Sbjct: 121 GLAKVRDD-IVIILNIEEVLTSEELVEISNI 150


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.141    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,922,951
Number of extensions: 434730
Number of successful extensions: 1570
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 1550
Number of HSP's successfully gapped: 54
Length of query: 153
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 56
Effective length of database: 27,191,033
Effective search space: 1522697848
Effective search space used: 1522697848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)