BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0035.p (208 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2434 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP me... 224 9e-59 BS_cheC [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP m... 179 2e-45 CAC2219 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP m... 148 5e-36 PH0487 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP me... 108 4e-24 TM0904 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP me... 104 1e-22 >BH2434 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation Length = 209 Score = 224 bits (570), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 1 VELFKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGA 60 +E + F +D+LKE+GNIGAGNAATALSQLL K IDM VP V +++F+E+T+ +GG Sbjct: 1 MENLSELQAFHLDILKEIGNIGAGNAATALSQLLQKTIDMNVPNVHIVSFQELTEWIGGP 60 Query: 61 EELVYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTG-NGELGEMELSALNEIGN 119 EE+V A FLR+EG+APG++FF+ T E A +++++ G + GE+ ++ +SAL E+GN Sbjct: 61 EEVVAATFLRIEGDAPGSMFFLATLEEAKGMVAQLTGASRSSLEGEMDDLSMSALKELGN 120 Query: 120 ILAGSYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFL-EGH 178 ILAGSYLS+LADFT L +YP+VP L++DM GAIL+YGL+ Q+GD+A++IDT EG Sbjct: 121 ILAGSYLSALADFTKLKLYPSVPGLSIDMIGAILNYGLIPLSQIGDEAIVIDTQISEEGE 180 Query: 179 NEIEGQFFLIPDPESFPKIFKALGV 203 G FFL+PDPESF +F +LGV Sbjct: 181 RRGAGHFFLLPDPESFDVMFSSLGV 205 >BS_cheC [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation Length = 209 Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 147/206 (71%), Gaps = 4/206 (1%) Query: 1 VELFKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGA 60 + +F K+ +MD+L+EVGNIGAG++A+A++QLL + IDM VP +LL+F+E+ D GGA Sbjct: 1 MSIFNGIKEEQMDILREVGNIGAGHSASAMAQLLNRKIDMEVPFAKLLSFDELVDFFGGA 60 Query: 61 EELVYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGE--MELSALNEIG 118 + V ++FLR+EG+ G++FFI+ A + + G +LGE M SAL+E+G Sbjct: 61 DVPVASIFLRMEGDLTGSMFFIMPFFQAEQFIRELIGNPDFDIEDLGEDHMSSSALHELG 120 Query: 119 NILAGSYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTT-FLEG 177 NILAGSYL++LAD T L +YP+VP +++DM GA++S GL++ Q+G+ A+++DT+ F + Sbjct: 121 NILAGSYLTALADLTKLQLYPSVPEVSLDMFGAVISEGLMELSQVGEHAIVVDTSIFDQS 180 Query: 178 H-NEIEGQFFLIPDPESFPKIFKALG 202 H E++ F++PD +SF K+F ALG Sbjct: 181 HQQELKAHMFMLPDYDSFEKLFVALG 206 >CAC2219 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation Length = 200 Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 128/201 (63%), Gaps = 5/201 (2%) Query: 4 FKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEEL 63 + ++D +KEV NIG+GNAATALSQLL K IDM VP + ++ F+ + ++G E++ Sbjct: 3 YSQLTPMQLDAIKEVVNIGSGNAATALSQLLNKKIDMTVPDINIVPFDTLFSEIG-EEKV 61 Query: 64 VYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNILAG 123 V +RV G+ PGN+ F+ E A+ ++ + GI+ + +L ++ S L EIGNI++ Sbjct: 62 AVGVVVRVLGDTPGNILFVFEKETAVEIVETLTGIK---DDDLTDLSSSVLCEIGNIISS 118 Query: 124 SYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNE-IE 182 SY+++++ FT+L + P+VPA + DM GAIL+ ++ GQ D+ L ++T FL+ + I Sbjct: 119 SYMNAISKFTNLVITPSVPAFSYDMLGAILTTSFIEAGQCDDNVLDLETVFLQDKTKNIS 178 Query: 183 GQFFLIPDPESFPKIFKALGV 203 G F+ IP P S KI LGV Sbjct: 179 GHFYYIPMPGSLEKILNILGV 199 >PH0487 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation Length = 212 Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 2/200 (1%) Query: 2 ELFKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAE 61 E KN + L E NIGA +AATALS++ GK ++++VP ++++ + + + VG E Sbjct: 10 EYLKNLDEMSKSALLETFNIGASHAATALSEMTGKEVNISVPDLKIIAIKNVPEVVG--E 67 Query: 62 ELVYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNIL 121 ++ AV++ + + + FFI E A+ + I G L E+ EM S+ E+GNIL Sbjct: 68 DVKVAVYIELGKDFSSHAFFIADYEDALRMFDIIMGNPLGTTKEMDEMVKSSFMEVGNIL 127 Query: 122 AGSYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNEI 181 ++ ++L++F +++ T P+LA+D AIL + L G+ D +++ T + Sbjct: 128 ISAFANALSEFLGITIEQTPPSLAIDFLPAILDFALADIGKYCDYTIILQTNIKISDVKF 187 Query: 182 EGQFFLIPDPESFPKIFKAL 201 E F L P PE KI + L Sbjct: 188 EEHFLLFPKPEDMKKILEKL 207 >TM0904 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation Length = 205 Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 4/202 (1%) Query: 6 NFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEELVY 65 + + D+LKE+GNIGAGNAATA+S ++ K ++++VP V+++ ++ EE+V Sbjct: 2 KISERQKDLLKEIGNIGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVV 61 Query: 66 AVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNILAGSY 125 V + V G+ G++ I+ +L + G L E SAL EIGNI+ G+Y Sbjct: 62 GVKMPVTGDIEGSVLLIMGTTVVKKILEILTGRAPDNLLNLDEFSASALREIGNIMCGTY 121 Query: 126 LSSLADFTSLSMYPTVPALAMDMAGAILSYGLL-QFGQMGDDALLIDTTFLEGHNEIE-- 182 +S+LADF + P L +DM AI + + + +D ++ T L+ E E Sbjct: 122 VSALADFLGFKIDTLPPQLVIDMISAIFAEASIEELEDNSEDQIVFVETLLKVEEEEEPL 181 Query: 183 -GQFFLIPDPESFPKIFKALGV 203 +IP P KIF+ +G+ Sbjct: 182 TSYMMMIPKPGYLVKIFERMGI 203 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,456,464 Number of extensions: 599168 Number of successful extensions: 1163 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 1133 Number of HSP's successfully gapped: 16 Length of query: 208 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 106 Effective length of database: 26,614,363 Effective search space: 2821122478 Effective search space used: 2821122478 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)