BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0034.p
         (165 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA0011 [NT] COG1871 Chemotaxis protein; stimulates methylation o...    97   1e-20
NMA0011 [L] COG2827 Predicted endonuclease containing a URI domain     97   1e-20
MA3064 [NT] COG1871 Chemotaxis protein; stimulates methylation o...    73   2e-13

>MA0011 [NT] COG1871 Chemotaxis protein; stimulates methylation of MCP
           proteins
          Length = 159

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 4   EQSVIKVGMADLNVGSEESLVRTTGLGSCVGVTLFDPGKKLAGMAHVMLPSSEIAREG-Q 62
           +  ++ VG+ D  +      ++T+GLGSCVGVT++D  +K+ G+ H MLP+  I + G +
Sbjct: 3   DPGIVMVGIGDCAIARCPVKIKTSGLGSCVGVTIYDRHEKIGGLLHTMLPN--IKKAGIK 60

Query: 63  MNIAKFADTALPEXXXXXXXXXXXXXXXXXKMAGGSQMFAFAGGSDTMRIGPRNVESCKL 122
            N  KF D  +                   K+ GGS MF     +  M IG RN++S K 
Sbjct: 61  DNPTKFTDAGIEYLVAEIIENGGSRRKLEAKLVGGSSMFE----NSHMNIGERNIKSAKE 116

Query: 123 ALEALKIPLIAEDTGGNFGRTIEIACNTGILYIRSVQKGTKEI 165
            L+ L + +IAEDTG N+GRTI     TG L I+++ +G K I
Sbjct: 117 TLKKLGLEIIAEDTGKNYGRTIIFDTLTGDLLIKTMLRGDKVI 159


>NMA0011 [L] COG2827 Predicted endonuclease containing a URI domain
          Length = 159

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 4   EQSVIKVGMADLNVGSEESLVRTTGLGSCVGVTLFDPGKKLAGMAHVMLPSSEIAREG-Q 62
           +  ++ VG+ D  +      ++T+GLGSCVGVT++D  +K+ G+ H MLP+  I + G +
Sbjct: 3   DPGIVMVGIGDCAIARCPVKIKTSGLGSCVGVTIYDRHEKIGGLLHTMLPN--IKKAGIK 60

Query: 63  MNIAKFADTALPEXXXXXXXXXXXXXXXXXKMAGGSQMFAFAGGSDTMRIGPRNVESCKL 122
            N  KF D  +                   K+ GGS MF     +  M IG RN++S K 
Sbjct: 61  DNPTKFTDAGIEYLVAEIIENGGSRRKLEAKLVGGSSMFE----NSHMNIGERNIKSAKE 116

Query: 123 ALEALKIPLIAEDTGGNFGRTIEIACNTGILYIRSVQKGTKEI 165
            L+ L + +IAEDTG N+GRTI     TG L I+++ +G K I
Sbjct: 117 TLKKLGLEIIAEDTGKNYGRTIIFDTLTGDLLIKTMLRGDKVI 159


>MA3064 [NT] COG1871 Chemotaxis protein; stimulates methylation of MCP
           proteins
          Length = 220

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 7/137 (5%)

Query: 8   IKVGMADLNVGSEESLVRTTGLGSCVGVTLFDPGKKLAGMAHVMLPSSEIAREGQMNIAK 67
           +  G+ +  +G +  L++  GLGSC+GV L D    + G+AHV+LP +  + E     AK
Sbjct: 70  LSAGIGEYKIG-KNVLLKVMGLGSCIGVILSDVSTGICGIAHVLLPGASNSGE-----AK 123

Query: 68  FADTALPEXXXXXXXXXXXXXXXXXKMAGGSQMFAFAGGSDTMRIGPRNVESCKLALEAL 127
           +A+TA+                   K AGG+Q+F      D ++IG RN  S +  L   
Sbjct: 124 YAETAIENMFEDMIRMGARKNRITAKFAGGAQVFKHM-SLDILKIGDRNAISVEETLVKR 182

Query: 128 KIPLIAEDTGGNFGRTI 144
            IP++A+D GG  GR +
Sbjct: 183 NIPILAKDVGGEVGRNV 199


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,039,212
Number of extensions: 344932
Number of successful extensions: 509
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 3
Length of query: 165
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 67
Effective length of database: 27,075,699
Effective search space: 1814071833
Effective search space used: 1814071833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)