BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0027.p
         (207 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0762 [C] COG1951 Tartrate dehydratase alpha subunit/Fumarate ...   261   5e-70
YHL004w_2 [J] COG0052 Ribosomal protein S2                            109   3e-24
SPAC24C9.10c [J] COG0052 Ribosomal protein S2                         105   3e-23

>STM0762 [C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase
           class I, N-terminal domain
          Length = 346

 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 12/205 (5%), Positives = 36/205 (17%)

Query: 1   MDRYIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAER 60
                   +    +      +   E      +                +     K     
Sbjct: 27  NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIAS 86

Query: 61  SGMFFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEK 120
                      G         +   + L       +     +              +L  
Sbjct: 87  KVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGY 146

Query: 121 FLGGIKNMKGLPSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDA 180
                     L   L  +   +    +            ++      D+ D         
Sbjct: 147 SWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQN 206

Query: 181 IRAVKLLTGKMADAVVEAHQGEDTT 205
             ++   + ++  A V  ++G +  
Sbjct: 207 PYSLLNRSFEVGLAEVSQYEGVELL 231


>YHL004w_2 [J] COG0052 Ribosomal protein S2
          Length = 215

 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 22/192 (11%)

Query: 4   YIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAERSGM 63
           YI+ E  GI+IIDL +T+  ++ A   V+ V+   G ILF+GT++  +  ++E A+++  
Sbjct: 30  YIYGEYKGIHIIDLNQTLSYLKRAAKVVEGVSESGGIILFLGTRQGQKRGLEEAAKKTHG 89

Query: 64  FFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEKFLG 123
           ++++ RW+ GTLTN   I           +WE         K+E+       +  E+ L 
Sbjct: 90  YYVSTRWIPGTLTNSTEISG---------IWE---------KQEI---DSNDNPTERALS 128

Query: 124 GIKNMKGL-PSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDAIR 182
             +  K + P  L +++P + R A+ EA K  +P +AI+DT+ +P  + Y IPGNDD++R
Sbjct: 129 PNETSKQVKPDLLVVLNPTENRNALLEAIKSRVPTIAIIDTDSEPSLVTYPIPGNDDSLR 188

Query: 183 AVKLLTGKMADA 194
           +V  L G +A A
Sbjct: 189 SVNFLLGVLARA 200


>SPAC24C9.10c [J] COG0052 Ribosomal protein S2
          Length = 263

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 22/197 (11%)

Query: 4   YIFTERNGIYIIDLQKTVKKVEEAYNFVKSVAGDNGTILFVGTKKQAQDSVKEEAERSGM 63
           +I+ +R GI+II L +T+  +  A + V+S+A +NG ILF+GT+   +DSV   A+R+  
Sbjct: 74  FIYGKREGIHIISLDQTMVYLRRAISVVRSIAKENGIILFIGTRNGQKDSVVAAAKRARG 133

Query: 64  FFINQRWLGGTLTNFQTIQKRIDRLKKLELWEEDGTFAVLPKKEVILLRKEKDRLEKFLG 123
           + I  RWL G LTN + +Q ++            G   +       L++ +K     F  
Sbjct: 134 YHIFDRWLPGLLTNAREVQGKL------------GGSILCKDNRGKLIQTDKKPSYVF-- 179

Query: 124 GIKNMKGLPSALFIIDPRKERIAVAEARKLGIPIVAIVDTNCDPDEIDYVIPGNDDAIRA 183
                   P  + I++P + + A  EA+K  +P + I+DT+ DP  + Y IP NDD++R 
Sbjct: 180 --------PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231

Query: 184 VKLLTGKMADAVVEAHQ 200
             L+ G ++    + +Q
Sbjct: 232 TDLIAGLLSRVAEQEYQ 248


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,331,047
Number of extensions: 674865
Number of successful extensions: 1451
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1449
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 105
Effective length of database: 26,614,363
Effective search space: 2794508115
Effective search space used: 2794508115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)