BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0026.p
         (216 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1605 [K] COG1396 Predicted transcriptional regulators              217   9e-57
ML0376 [R] COG0596 Predicted hydrolases or acyltransferases (alp...    82   6e-16

>STM1605 [K] COG1396 Predicted transcriptional regulators
          Length = 178

 Score =  217 bits (553), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 0/200 (0%), Positives = 0/200 (0%), Gaps = 2/200 (1%)

Query: 1   MAVDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGV 60
           M      +                 L E +G        +     S       +IAT   
Sbjct: 1   MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLN 60

Query: 61  VESYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXX 120
           V   +                           +  ++     +                 
Sbjct: 61  VPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGTVSESTPHKAG 120

Query: 121 XXXXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKIST 180
               ++  Q                                            L      
Sbjct: 121 VIEHVVVIQGRL--DMCTGGVWQTIDAGKGLRFAGDTAHTYRNSSDQTVHFHSLIHYPRD 178

Query: 181 IGENISIRRFVRYELGEGLE 200
                               
Sbjct: 179                      198


>ML0376 [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily)
          Length = 342

 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MAVDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGV 60
           MAV A  VKELRE+TGAG++D K+AL E +G++  AAELLREKG++ AA KA R+A EG+
Sbjct: 1   MAVTAAQVKELREKTGAGIMDAKRALVETDGNMEAAAELLREKGIAKAAKKADRVAAEGL 60

Query: 61  VESYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANP 106
             + I   G +  +VE+N ETDFV K D F    ++ A  IA+  P
Sbjct: 61  --TGIAVNGNVAAIVELNSETDFVAKNDQFVALVKETAELIASKKP 104



 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 13/87 (14%)

Query: 133 EGKPEKIVEKMVEGRISKFY-------EEHCLLEQTFVKDQDKTISQLLNEKISTIGENI 185
           EGKPEKI +K++ G+++KF        ++  LL Q ++ D  KT+   L  K        
Sbjct: 257 EGKPEKIWDKILPGKMAKFIVDNTKVDQQFALLAQLYIMDDSKTVEAFLESK------GA 310

Query: 186 SIRRFVRYELGEGLEKKVDNFVEEVMA 212
               F R+E+GEG+EK   +F  EV A
Sbjct: 311 KAIAFTRFEVGEGIEKAETDFAAEVEA 337


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.133    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,533,730
Number of extensions: 492119
Number of successful extensions: 1190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1187
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 114
Effective length of database: 26,614,363
Effective search space: 3034037382
Effective search space used: 3034037382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 113 (48.1 bits)