BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0023.p (261 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all2995 [I] COG0020 Undecaprenyl pyrophosphate synthase 268 9e-72 CAC1791 [I] COG0020 Undecaprenyl pyrophosphate synthase 252 3e-67 all3432 [I] COG0020 Undecaprenyl pyrophosphate synthase 240 1e-63 SPCC1919.08c [J] COG1841 Ribosomal protein L30/L7E 211 1e-54 SPCC1919.10c [Z] COG5022 Myosin heavy chain 211 1e-54 >all2995 [I] COG0020 Undecaprenyl pyrophosphate synthase Length = 211 Score = 268 bits (684), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 0/245 (0%), Positives = 0/245 (0%) Query: 14 LSRKDRQEQPVEISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKAVKRTTIAAND 73 +++ + + + + A N A Sbjct: 3 KAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPA 62 Query: 74 LGVEFLTMYAFSTENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRVMGDTDALPAH 133 +E + + L + + + ++ Sbjct: 63 AMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTA 122 Query: 134 TRKAMEEAVDRTKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSPEDITSELIDN 193 T I D LI + Sbjct: 123 NVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILH 182 Query: 194 RLMTSGLPDPDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHLLQAVAEYQRR 253 Sbjct: 183 242 Query: 254 TRRYG 258 Sbjct: 243 247 >CAC1791 [I] COG0020 Undecaprenyl pyrophosphate synthase Length = 257 Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 118/240 (49%), Positives = 168/240 (70%), Gaps = 3/240 (1%) Query: 25 EISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKAVKRTTIAANDLGVEFLTMYAF 84 +I+ NIP+H+A+IMDGNGRWAK+R LPR +GH+ G +A+KR +D+GV++LT+Y F Sbjct: 18 DINFSNIPKHIAIIMDGNGRWAKKRNLPRTMGHKAGGEALKRIVRECSDIGVKYLTVYGF 77 Query: 85 STENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRVMGDTDALPAHTRKAMEEAVDR 144 STENW RPKEEV+ +MRL VEFL E +EL + NV + +G+ LP A+ +A ++ Sbjct: 78 STENWIRPKEEVNAIMRLIVEFLKREFNELNKNNVIINPIGNILGLPEACITALNDAKNK 137 Query: 145 TKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSPEDI---TSELIDNRLMTSGLP 201 TK+NTGL+LN ALNYG R EI + ++ + + +S ++I + E + L T +P Sbjct: 138 TKNNTGLMLNLALNYGGRDEILNAVKNIFASYEENKISKDEIFNLSDEEFSSYLYTGCIP 197 Query: 202 DPDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHLLQAVAEYQRRTRRYGGLK 261 DPD++IR SGE RLSNF+LWQ AYSEFW+++ WP+F L A+ +YQ R RR+GG+K Sbjct: 198 DPDIIIRPSGEKRLSNFLLWQCAYSEFWYSNINWPDFSIEDLHTAIKDYQNRDRRFGGVK 257 >all3432 [I] COG0020 Undecaprenyl pyrophosphate synthase Length = 258 Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/239 (47%), Positives = 154/239 (64%) Query: 23 PVEISPDNIPRHVAVIMDGNGRWAKRRGLPRIVGHQNGMKAVKRTTIAANDLGVEFLTMY 82 P ++ P IP+H+AVIMDGNGRWA RGLPRI GH+ G + +K D G++ LT Y Sbjct: 15 PPDLDPQKIPQHIAVIMDGNGRWATSRGLPRIAGHRQGARTLKELLRCCKDWGIKALTAY 74 Query: 83 AFSTENWKRPKEEVDFLMRLPVEFLALELDELIEKNVQVRVMGDTDALPAHTRKAMEEAV 142 AFSTENW+RP EEVDFLM L L EL ++ + V++ +GD ALP + ME ++ Sbjct: 75 AFSTENWQRPIEEVDFLMLLFERLLRRELSQMHREGVRISFIGDLTALPKSLQTEMERSM 134 Query: 143 DRTKHNTGLILNFALNYGSRKEIEDCMRGLGRDIQAGLLSPEDITSELIDNRLMTSGLPD 202 T +N + A+NYGSR EI R + +Q G LS + + +++ L T+ Sbjct: 135 TETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEGIVEQHLYTTDTQP 194 Query: 203 PDLLIRTSGEMRLSNFMLWQVAYSEFWFTDAYWPEFDKTHLLQAVAEYQRRTRRYGGLK 261 PDLLIRTSGEMRLSNF+LWQ+AY+E +FTD WP+FD+ QA+ YQ+R RR+G +K Sbjct: 195 PDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDREAFHQALLSYQKRDRRFGQVK 253 >SPCC1919.08c [J] COG1841 Ribosomal protein L30/L7E Length = 259 Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 98/227 (43%), Positives = 139/227 (61%) Query: 34 HVAVIMDGNGRWAKRRGLPRIVGHQNGMKAVKRTTIAANDLGVEFLTMYAFSTENWKRPK 93 HVA+IMDGNGRWAK+RG+PR++GH+ G+ A+KRT A V LT++ FSTENW RP Sbjct: 24 HVAIIMDGNGRWAKQRGMPRVLGHRAGVNALKRTVEGAQSQNVGVLTVFGFSTENWSRPP 83 Query: 94 EEVDFLMRLPVEFLALELDELIEKNVQVRVMGDTDALPAHTRKAMEEAVDRTKHNTGLIL 153 +EV LM L ++ +L+ L + V+VR++G L + +E A RT N+ +L Sbjct: 84 QEVSELMGLLKAYVESDLERLAKAGVRVRIIGRRTGLSPDIAEVIERAERRTAQNSEFVL 143 Query: 154 NFALNYGSRKEIEDCMRGLGRDIQAGLLSPEDITSELIDNRLMTSGLPDPDLLIRTSGEM 213 A NYG + +I D R ++ G D+ + + L T+ P PDL++RTSGE Sbjct: 144 QVAFNYGGQADITDAARAFAERVERGEAKASDLNEKTFEQFLSTASAPPPDLIVRTSGER 203 Query: 214 RLSNFMLWQVAYSEFWFTDAYWPEFDKTHLLQAVAEYQRRTRRYGGL 260 R+SNF+LW AY+E F D WP++ L A+AEY+ R RRYGG+ Sbjct: 204 RISNFLLWDCAYAELVFQDVLWPDYGPEALAAAIAEYRGRDRRYGGV 250 >SPCC1919.10c [Z] COG5022 Myosin heavy chain Length = 259 Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 98/227 (43%), Positives = 139/227 (61%) Query: 34 HVAVIMDGNGRWAKRRGLPRIVGHQNGMKAVKRTTIAANDLGVEFLTMYAFSTENWKRPK 93 HVA+IMDGNGRWAK+RG+PR++GH+ G+ A+KRT A V LT++ FSTENW RP Sbjct: 24 HVAIIMDGNGRWAKQRGMPRVLGHRAGVNALKRTVEGAQSQNVGVLTVFGFSTENWSRPP 83 Query: 94 EEVDFLMRLPVEFLALELDELIEKNVQVRVMGDTDALPAHTRKAMEEAVDRTKHNTGLIL 153 +EV LM L ++ +L+ L + V+VR++G L + +E A RT N+ +L Sbjct: 84 QEVSELMGLLKAYVESDLERLAKAGVRVRIIGRRTGLSPDIAEVIERAERRTAQNSEFVL 143 Query: 154 NFALNYGSRKEIEDCMRGLGRDIQAGLLSPEDITSELIDNRLMTSGLPDPDLLIRTSGEM 213 A NYG + +I D R ++ G D+ + + L T+ P PDL++RTSGE Sbjct: 144 QVAFNYGGQADITDAARAFAERVERGEAKASDLNEKTFEQFLSTASAPPPDLIVRTSGER 203 Query: 214 RLSNFMLWQVAYSEFWFTDAYWPEFDKTHLLQAVAEYQRRTRRYGGL 260 R+SNF+LW AY+E F D WP++ L A+AEY+ R RRYGG+ Sbjct: 204 RISNFLLWDCAYAELVFQDVLWPDYGPEALAAAIAEYRGRDRRYGGV 250 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,990,593 Number of extensions: 879007 Number of successful extensions: 1808 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 1772 Number of HSP's successfully gapped: 28 Length of query: 261 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 157 Effective length of database: 26,383,695 Effective search space: 4142240115 Effective search space used: 4142240115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)